Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OFB entry

There is 1 chain in PDB entry 8OFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 1041
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8OFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
53 75Right-handed alpha
Helix 4
AA4
A
80 92Right-handed alpha
Helix 5
AA5
A
103 120Right-handed alpha
Helix 6
AA6
A
130 145Right-handed alpha
Helix 7
AA7
A
159 173Right-handed alpha
Helix 8
AA8
A
182 188Right-handed alpha
Helix 9
AA9
A
188 195Right-handed alpha
Helix 10
AB1
A
204 211Right-handed alpha
Helix 11
AB2
A
211 222Right-handed alpha
Helix 12
AB3
A
225 239Right-handed alpha
Helix 13
AB4
A
265 267Right-handed 310
Helix 14
AB5
A
268 274Right-handed alpha
Helix 15
AB6
A
297 309Right-handed alpha
Helix 16
AB7
A
318 332Right-handed alpha
Helix 17
AB8
A
343 352Right-handed alpha
Helix 18
AB9
A
400 409Right-handed alpha
Helix 19
AC1
A
410 412Right-handed 310
Helix 20
AC2
A
430 445Right-handed alpha
Helix 21
AC3
A
456 473Right-handed alpha
Helix 22
AC4
A
488 500Right-handed alpha
Helix 23
AC5
A
585 599Right-handed alpha
Helix 24
AC6
A
609 624Right-handed alpha
Helix 25
AC7
A
639 649Right-handed alpha
Helix 26
AC8
A
654 684Right-handed alpha
Helix 27
AC9
A
691 711Right-handed alpha
Helix 28
AD1
A
756 769Right-handed alpha
Helix 29
AD2
A
771 785Right-handed alpha
Helix 30
AD3
A
799 813Right-handed alpha
Helix 31
AD4
A
815 819Right-handed 310
Helix 32
AD5
A
840 850Right-handed alpha
Helix 33
AD6
A
857 875Right-handed alpha
Helix 34
AD7
A
907 911Right-handed 310
Helix 35
AD8
A
942 954Right-handed alpha
Helix 36
AD9
A
960 971Right-handed alpha
Helix 37
AE1
A
985 1004Right-handed alpha
Helix 38
AE2
A
1004 1020Right-handed alpha
Helix 39
AE3
A
1024 1040Right-handed alpha
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There are 10 sheets in PDB entry 8OFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
6 7anti-parallel
Strand 3
A
549 556parallel
Strand 4
A
532 534anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
6 7anti-parallel
Strand 3
A
549 556parallel
Strand 4
A
543 546anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
252 255parallel
Strand 3
A
199 202parallel
Strand 4
A
124 128parallel
Strand 5
A
177 181parallel
Strand 6
A
151 154parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
357 361parallel
Strand 3
A
312 316parallel
Strand 4
A
380 384parallel
Strand 5
A
421 427parallel
Strand 6
A
287 293parallel
Strand 7
A
449 451parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
396 399anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
418 419anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 507first strand
Strand 2
A
510 517anti-parallel
Strand 3
A
520 526anti-parallel
Strand 4
A
482 486parallel
Strand 5
A
601 604parallel
Strand 6
A
630 632parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
558 560anti-parallel
Strand 3
A
582 584anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 729first strand
Strand 2
A
712 720anti-parallel
Strand 3
A
924 936anti-parallel
Strand 4
A
736 749anti-parallel
Strand 5
A
879 890anti-parallel
Strand 6
A
893 905anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 976first strand
Strand 2
A
982 984anti-parallel
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