Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OFD entry

There is 1 chain in PDB entry 8OFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 109GLU 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8OFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 120Right-handed 310
Helix 2
AA2
A
251 256Right-handed 310
Helix 3
AA3
A
257 266Right-handed alpha
Helix 4
AA4
A
268 277Right-handed alpha
Helix 5
AA5
A
306 315Right-handed alpha
Helix 6
AA6
A
352 356Right-handed 310
Helix 7
AA7
A
478 486Right-handed alpha
Helix 8
AA8
A
489 499Right-handed alpha
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There are 7 sheets in PDB entry 8OFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
432 435anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
449 456anti-parallel
Strand 5
A
365 371anti-parallel
Strand 6
A
346 351anti-parallel
Strand 7
A
341 343anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
153 159anti-parallel
Strand 4
A
223 231anti-parallel
Strand 5
A
172 180anti-parallel
Strand 6
A
202 206anti-parallel
Strand 7
A
332 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
302 304anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
240 241anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
211 215anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 427first strand
Strand 2
A
396 403anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
375 382anti-parallel
Strand 5
A
463 465anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 427first strand
Strand 2
A
396 403anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
375 382anti-parallel
Strand 5
A
505 507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il