Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OFH entry

There are 6 chains in PDB entry 8OFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 86LEU 234
B
 PRO 85LYS 236
C
 ILE 86PRO 235
D
 ILE 86PRO 235
E
 ILE 86PRO 235
F
 ILE 86PRO 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 8OFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 104Right-handed alpha
Helix 2
AA2
A
120 125Right-handed alpha
Helix 3
AA3
A
135 144Right-handed alpha
Helix 4
AA4
A
181 194Right-handed alpha
Helix 5
AA5
A
221 234Right-handed alpha
Helix 6
AA6
B
87 107Right-handed alpha
Helix 7
AA7
B
120 125Right-handed alpha
Helix 8
AA8
B
135 144Right-handed alpha
Helix 9
AA9
B
181 192Right-handed alpha
Helix 10
AB1
B
221 234Right-handed alpha
Helix 11
AB2
C
87 107Right-handed alpha
Helix 12
AB3
C
120 125Right-handed alpha
Helix 13
AB4
C
135 144Right-handed alpha
Helix 14
AB5
C
181 194Right-handed alpha
Helix 15
AB6
C
221 234Right-handed alpha
Helix 16
AB7
D
87 104Right-handed alpha
Helix 17
AB8
D
120 125Right-handed alpha
Helix 18
AB9
D
135 144Right-handed alpha
Helix 19
AC1
D
181 193Right-handed alpha
Helix 20
AC2
D
221 234Right-handed alpha
Helix 21
AC3
E
87 104Right-handed alpha
Helix 22
AC4
E
120 125Right-handed alpha
Helix 23
AC5
E
135 144Right-handed alpha
Helix 24
AC6
E
181 193Right-handed alpha
Helix 25
AC7
E
221 234Right-handed alpha
Helix 26
AC8
F
87 107Right-handed alpha
Helix 27
AC9
F
120 125Right-handed alpha
Helix 28
AD1
F
135 144Right-handed alpha
Helix 29
AD2
F
181 193Right-handed alpha
Helix 30
AD3
F
221 234Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8OFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
110 114parallel
Strand 5
A
197 201anti-parallel
Strand 6
A
208 212anti-parallel
Strand 7
A
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 133first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
153 157anti-parallel
Strand 4
B
110 114parallel
Strand 5
B
197 201anti-parallel
Strand 6
B
208 212anti-parallel
Strand 7
B
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 133first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
153 157anti-parallel
Strand 4
C
110 114parallel
Strand 5
C
197 201anti-parallel
Strand 6
C
208 212anti-parallel
Strand 7
C
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 133first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
153 157anti-parallel
Strand 4
D
110 114parallel
Strand 5
D
197 201anti-parallel
Strand 6
D
208 212anti-parallel
Strand 7
D
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 133first strand
Strand 2
E
160 166anti-parallel
Strand 3
E
153 157anti-parallel
Strand 4
E
110 114parallel
Strand 5
E
197 201anti-parallel
Strand 6
E
208 212anti-parallel
Strand 7
E
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
128 133first strand
Strand 2
F
160 166anti-parallel
Strand 3
F
153 157anti-parallel
Strand 4
F
110 114parallel
Strand 5
F
197 201anti-parallel
Strand 6
F
208 212anti-parallel
Strand 7
F
215 220anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il