Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFI entry

There are 4 chains in PDB entry 8OFI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 222	THR 706
B	MET 222	THR 706
C	MET 222	THR 706
D	MET 222	MET 700

There are 85 helices in PDB entry 8OFI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	230	235	Right-handed alpha
Helix 2	AA2	A	237	248	Right-handed alpha
Helix 3	AA3	A	260	287	Right-handed alpha
Helix 4	AA4	A	293	314	Right-handed alpha
Helix 5	AA5	A	334	340	Right-handed alpha
Helix 6	AA6	A	342	351	Right-handed alpha
Helix 7	AA7	A	352	362	Right-handed alpha
Helix 8	AA8	A	373	388	Right-handed alpha
Helix 9	AA9	A	390	406	Right-handed alpha
Helix 10	AB1	A	411	444	Right-handed alpha
Helix 11	AB2	A	450	455	Right-handed alpha
Helix 12	AB3	A	461	476	Right-handed alpha
Helix 13	AB4	A	489	522	Right-handed alpha
Helix 14	AB5	A	523	542	Right-handed alpha
Helix 15	AB6	A	545	558	Right-handed alpha
Helix 16	AB7	A	566	574	Right-handed alpha
Helix 17	AB8	A	575	592	Right-handed alpha
Helix 18	AB9	A	594	599	Right-handed alpha
Helix 19	AC1	A	601	611	Right-handed alpha
Helix 20	AC2	A	687	697	Right-handed alpha
Helix 21	AC3	A	700	705	Right-handed alpha
Helix 22	AC4	B	230	235	Right-handed alpha
Helix 23	AC5	B	237	249	Right-handed alpha
Helix 24	AC6	B	260	287	Right-handed alpha
Helix 25	AC7	B	293	314	Right-handed alpha
Helix 26	AC8	B	332	337	Right-handed alpha
Helix 27	AC9	B	338	341	Right-handed 310
Helix 28	AD1	B	342	350	Right-handed alpha
Helix 29	AD2	B	352	362	Right-handed alpha
Helix 30	AD3	B	374	386	Right-handed alpha
Helix 31	AD4	B	387	390	Right-handed 310
Helix 32	AD5	B	391	402	Right-handed alpha
Helix 33	AD6	B	411	444	Right-handed alpha
Helix 34	AD7	B	450	456	Right-handed alpha
Helix 35	AD8	B	461	479	Right-handed alpha
Helix 36	AD9	B	489	522	Right-handed alpha
Helix 37	AE1	B	522	542	Right-handed alpha
Helix 38	AE2	B	545	558	Right-handed alpha
Helix 39	AE3	B	566	573	Right-handed alpha
Helix 40	AE4	B	575	592	Right-handed alpha
Helix 41	AE5	B	604	609	Right-handed alpha
Helix 42	AE6	B	610	612	Right-handed 310
Helix 43	AE7	B	687	696	Right-handed alpha
Helix 44	AE8	B	697	705	Right-handed alpha
Helix 45	AE9	C	230	235	Right-handed alpha
Helix 46	AF1	C	238	250	Right-handed alpha
Helix 47	AF2	C	260	287	Right-handed alpha
Helix 48	AF3	C	296	314	Right-handed alpha
Helix 49	AF4	C	342	349	Right-handed alpha
Helix 50	AF5	C	352	361	Right-handed alpha
Helix 51	AF6	C	376	386	Right-handed alpha
Helix 52	AF7	C	387	389	Right-handed 310
Helix 53	AF8	C	390	402	Right-handed alpha
Helix 54	AF9	C	411	444	Right-handed alpha
Helix 55	AG1	C	450	456	Right-handed alpha
Helix 56	AG2	C	461	479	Right-handed alpha
Helix 57	AG3	C	489	522	Right-handed alpha
Helix 58	AG4	C	522	542	Right-handed alpha
Helix 59	AG5	C	545	560	Right-handed alpha
Helix 60	AG6	C	566	574	Right-handed alpha
Helix 61	AG7	C	575	593	Right-handed alpha
Helix 62	AG8	C	602	610	Right-handed alpha
Helix 63	AG9	C	687	697	Right-handed alpha
Helix 64	AH1	C	700	706	Right-handed alpha
Helix 65	AH2	D	239	250	Right-handed alpha
Helix 66	AH3	D	260	287	Right-handed alpha
Helix 67	AH4	D	293	315	Right-handed alpha
Helix 68	AH5	D	330	340	Right-handed alpha
Helix 69	AH6	D	342	351	Right-handed alpha
Helix 70	AH7	D	352	365	Right-handed alpha
Helix 71	AH8	D	374	386	Right-handed alpha
Helix 72	AH9	D	387	389	Right-handed 310
Helix 73	AI1	D	390	404	Right-handed alpha
Helix 74	AI2	D	411	444	Right-handed alpha
Helix 75	AI3	D	450	455	Right-handed alpha
Helix 76	AI4	D	462	478	Right-handed alpha
Helix 77	AI5	D	489	522	Right-handed alpha
Helix 78	AI6	D	523	542	Right-handed alpha
Helix 79	AI7	D	545	558	Right-handed alpha
Helix 80	AI8	D	566	573	Right-handed alpha
Helix 81	AI9	D	575	592	Right-handed alpha
Helix 82	AJ1	D	594	600	Right-handed alpha
Helix 83	AJ2	D	601	611	Right-handed alpha
Helix 84	AJ3	D	661	666	Right-handed alpha
Helix 85	AJ4	D	686	697	Right-handed alpha

There are 9 sheets in PDB entry 8OFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	616	first strand
Strand 2	A	681	686	anti-parallel
Strand 3	A	632	634	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	653	first strand
Strand 2	A	641	644	anti-parallel
Strand 3	A	673	676	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	616	first strand
Strand 2	B	681	682	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	685	686	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	673	676	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	614	first strand
Strand 2	C	682	686	anti-parallel
Strand 3	C	632	636	anti-parallel
Strand 4	C	658	659	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	641	644	anti-parallel
Strand 3	C	674	676	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	616	first strand
Strand 2	D	681	684	anti-parallel
Strand 3	D	634	636	anti-parallel
Strand 4	D	658	659	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	628	629	first strand
Strand 2	D	669	670	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFI