Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFN entry

There are 2 chains in PDB entry 8OFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLU 392
B	ALA 1	GLU 392

There are 14 helices in PDB entry 8OFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	82	87	Right-handed 310
Helix 3	AA3	A	148	150	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	207	212	Right-handed alpha
Helix 6	AA6	A	227	230	Right-handed 310
Helix 7	AA7	A	250	259	Right-handed alpha
Helix 8	AA8	B	1	6	Right-handed 310
Helix 9	AA9	B	82	87	Right-handed 310
Helix 10	AB1	B	148	150	Right-handed 310
Helix 11	AB2	B	151	156	Right-handed alpha
Helix 12	AB3	B	207	212	Right-handed alpha
Helix 13	AB4	B	227	230	Right-handed 310
Helix 14	AB5	B	250	259	Right-handed alpha

There are 14 sheets in PDB entry 8OFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	29	35	parallel
Strand 3	A	38	51	anti-parallel
Strand 4	A	273	276	anti-parallel
Strand 5	A	262	266	anti-parallel
Strand 6	A	201	206	anti-parallel
Strand 7	A	193	198	anti-parallel
Strand 8	A	109	129	anti-parallel
Strand 9	A	135	143	first strand
Strand 10	A	157	162	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	201	206	anti-parallel
Strand 5	A	262	266	anti-parallel
Strand 6	A	273	276	anti-parallel
Strand 7	A	38	51	anti-parallel
Strand 8	A	55	73	first strand
Strand 9	A	217	219	anti-parallel
Strand 10	A	225	226	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	168	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	246	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	312	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	361	368	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	355	356	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	385	391	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	29	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	273	276	anti-parallel
Strand 5	B	262	266	anti-parallel
Strand 6	B	201	206	anti-parallel
Strand 7	B	193	198	anti-parallel
Strand 8	B	109	129	anti-parallel
Strand 9	B	135	143	first strand
Strand 10	B	157	162	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	193	198	anti-parallel
Strand 4	B	201	206	anti-parallel
Strand 5	B	262	266	anti-parallel
Strand 6	B	273	276	anti-parallel
Strand 7	B	38	51	anti-parallel
Strand 8	B	55	73	first strand
Strand 9	B	217	218	anti-parallel
Strand 10	B	225	226	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	168	172	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	244	246	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	312	first strand
Strand 2	B	318	324	anti-parallel
Strand 3	B	361	368	anti-parallel
Strand 4	B	348	349	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	355	356	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	337	first strand
Strand 2	B	372	378	anti-parallel
Strand 3	B	385	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFN