Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFP entry

There are 6 chains in PDB entry 8OFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 187	GLU 377
B	THR 187	GLU 377
C	LEU 186	LYS 381
D	LEU 186	GLU 375
E	LEU 186	ASP 378
F	THR 187	GLU 377

There are 15 helices in PDB entry 8OFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	285	289	Right-handed 310
Helix 2	AA2	A	322	326	Right-handed 310
Helix 3	AA3	B	230	234	Right-handed 310
Helix 4	AA4	B	276	281	Right-handed alpha
Helix 5	AA5	B	285	289	Right-handed 310
Helix 6	AA6	B	312	314	Right-handed 310
Helix 7	AA7	B	324	326	Right-handed 310
Helix 8	AA8	C	324	326	Right-handed 310
Helix 9	AA9	D	230	234	Right-handed 310
Helix 10	AB1	E	230	234	Right-handed 310
Helix 11	AB2	E	285	289	Right-handed 310
Helix 12	AB3	E	312	316	Right-handed 310
Helix 13	AB4	E	324	326	Right-handed 310
Helix 14	AB5	F	230	234	Right-handed 310
Helix 15	AB6	F	285	289	Right-handed 310

There are 14 sheets in PDB entry 8OFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	188	190	anti-parallel
Strand 3	A	206	213	anti-parallel
Strand 4	A	220	227	anti-parallel
Strand 5	A	367	369	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	252	first strand
Strand 2	A	345	352	anti-parallel
Strand 3	A	332	336	anti-parallel
Strand 4	A	316	318	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	188	189	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	218	226	anti-parallel
Strand 5	B	368	372	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	358	360	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	252	first strand
Strand 2	B	345	352	anti-parallel
Strand 3	B	334	337	anti-parallel
Strand 4	B	316	318	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	330	331	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	218	226	anti-parallel
Strand 4	C	363	372	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	249	first strand
Strand 2	C	348	352	anti-parallel
Strand 3	C	330	336	anti-parallel
Strand 4	C	316	322	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	189	first strand
Strand 2	D	210	214	anti-parallel
Strand 3	D	218	226	anti-parallel
Strand 4	D	363	372	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	252	first strand
Strand 2	D	345	348	anti-parallel
Strand 3	D	330	337	anti-parallel
Strand 4	D	316	322	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	187	189	anti-parallel
Strand 3	E	206	215	anti-parallel
Strand 4	E	218	227	anti-parallel
Strand 5	E	367	372	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	252	first strand
Strand 2	E	345	352	anti-parallel
Strand 3	E	330	337	anti-parallel
Strand 4	E	317	322	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	271	first strand
Strand 2	F	188	190	anti-parallel
Strand 3	F	207	215	anti-parallel
Strand 4	F	218	226	anti-parallel
Strand 5	F	370	372	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	251	first strand
Strand 2	F	346	352	anti-parallel
Strand 3	F	330	337	anti-parallel
Strand 4	F	318	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFP