Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFQ entry

There are 7 chains in PDB entry 8OFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 186	GLU 371
B	LYS 186	GLU 371
C	LYS 186	GLU 371
D	LYS 186	GLU 371
E	LYS 186	GLU 371
F	LYS 186	GLU 371
G	LYS 186	TYR 324

There are 24 helices in PDB entry 8OFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	267	269	Right-handed 310
Helix 2	AA2	A	287	291	Right-handed 310
Helix 3	AA3	A	308	310	Right-handed 310
Helix 4	AA4	B	267	269	Right-handed 310
Helix 5	AA5	B	287	291	Right-handed 310
Helix 6	AA6	B	308	310	Right-handed 310
Helix 7	AA7	C	267	269	Right-handed 310
Helix 8	AA8	C	287	291	Right-handed 310
Helix 9	AA9	C	308	310	Right-handed 310
Helix 10	AB1	D	267	269	Right-handed 310
Helix 11	AB2	D	287	291	Right-handed 310
Helix 12	AB3	D	308	310	Right-handed 310
Helix 13	AB4	E	267	269	Right-handed 310
Helix 14	AB5	E	287	291	Right-handed 310
Helix 15	AB6	E	308	310	Right-handed 310
Helix 16	AB7	F	267	269	Right-handed 310
Helix 17	AB8	F	287	291	Right-handed 310
Helix 18	AB9	F	308	310	Right-handed 310
Helix 19	AC1	G	267	269	Right-handed 310
Helix 20	AC2	G	287	291	Right-handed 310
Helix 21	AC3	G	308	310	Right-handed 310
Helix 22	AC4	H	267	269	Right-handed 310
Helix 23	AC5	H	287	291	Right-handed 310
Helix 24	AC6	H	308	310	Right-handed 310

There are 24 sheets in PDB entry 8OFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	188	191	anti-parallel
Strand 3	A	207	216	anti-parallel
Strand 4	A	219	228	anti-parallel
Strand 5	A	363	368	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	354	357	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	254	first strand
Strand 2	A	341	348	anti-parallel
Strand 3	A	326	333	anti-parallel
Strand 4	A	312	318	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	188	191	anti-parallel
Strand 3	B	207	216	anti-parallel
Strand 4	B	219	228	anti-parallel
Strand 5	B	363	368	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	354	357	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	254	first strand
Strand 2	B	341	348	anti-parallel
Strand 3	B	326	333	anti-parallel
Strand 4	B	312	318	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	188	191	anti-parallel
Strand 3	C	207	216	anti-parallel
Strand 4	C	219	228	anti-parallel
Strand 5	C	363	368	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	237	first strand
Strand 2	C	354	357	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	254	first strand
Strand 2	C	341	348	anti-parallel
Strand 3	C	326	333	anti-parallel
Strand 4	C	312	318	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	188	191	anti-parallel
Strand 3	D	207	216	anti-parallel
Strand 4	D	219	228	anti-parallel
Strand 5	D	363	368	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	354	357	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	254	first strand
Strand 2	D	341	348	anti-parallel
Strand 3	D	326	333	anti-parallel
Strand 4	D	312	318	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	188	191	anti-parallel
Strand 3	E	207	216	anti-parallel
Strand 4	E	219	228	anti-parallel
Strand 5	E	363	368	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	237	first strand
Strand 2	E	354	357	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	254	first strand
Strand 2	E	341	348	anti-parallel
Strand 3	E	326	333	anti-parallel
Strand 4	E	312	318	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	188	191	anti-parallel
Strand 3	F	207	216	anti-parallel
Strand 4	F	219	228	anti-parallel
Strand 5	F	363	368	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	237	first strand
Strand 2	F	354	357	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	254	first strand
Strand 2	F	341	348	anti-parallel
Strand 3	F	326	333	anti-parallel
Strand 4	F	312	318	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	188	191	anti-parallel
Strand 3	G	207	216	anti-parallel
Strand 4	G	219	228	anti-parallel
Strand 5	G	363	368	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	237	first strand
Strand 2	G	354	357	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	254	first strand
Strand 2	G	341	348	anti-parallel
Strand 3	G	326	333	anti-parallel
Strand 4	G	312	318	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	273	first strand
Strand 2	H	188	191	anti-parallel
Strand 3	H	207	216	anti-parallel
Strand 4	H	219	228	anti-parallel
Strand 5	H	363	368	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	235	237	first strand
Strand 2	H	354	357	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	254	first strand
Strand 2	H	341	348	anti-parallel
Strand 3	H	326	333	anti-parallel
Strand 4	H	312	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFQ