Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OFT entry

There are 3 chains in PDB entry 8OFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 183ASN 377
B
 ASP 184ASN 377
C
 HIS 183ASN 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8OFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 235Right-handed 310
Helix 2
AA2
A
286 290Right-handed 310
Helix 3
AA3
A
306 310Right-handed 310
Helix 4
AA4
A
325 327Right-handed 310
Helix 5
AA5
B
231 235Right-handed 310
Helix 6
AA6
B
286 290Right-handed 310
Helix 7
AA7
B
325 327Right-handed 310
Helix 8
AA8
C
231 235Right-handed 310
Helix 9
AA9
C
286 290Right-handed 310
Helix 10
AB1
C
306 310Right-handed 310
Helix 11
AB2
C
325 327Right-handed 310
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There are 9 sheets in PDB entry 8OFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
207 216anti-parallel
Strand 5
A
219 228anti-parallel
Strand 6
A
368 373anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
359 361anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 253first strand
Strand 2
A
346 353anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
317 323anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
271 274anti-parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
207 216anti-parallel
Strand 5
B
219 228anti-parallel
Strand 6
B
368 373anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
359 361anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 253first strand
Strand 2
B
346 353anti-parallel
Strand 3
B
331 338anti-parallel
Strand 4
B
317 323anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 278first strand
Strand 2
C
271 274anti-parallel
Strand 3
C
184 190anti-parallel
Strand 4
C
207 216anti-parallel
Strand 5
C
219 228anti-parallel
Strand 6
C
368 373anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 237first strand
Strand 2
C
359 361anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 253first strand
Strand 2
C
346 353anti-parallel
Strand 3
C
331 338anti-parallel
Strand 4
C
317 323anti-parallel
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