Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFU entry

There are 6 chains in PDB entry 8OFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 183	GLU 366
B	LYS 179	GLU 366
C	LYS 183	GLU 366
D	LYS 183	GLU 366
E	LYS 179	GLU 366
F	LYS 183	GLU 366

There are 22 helices in PDB entry 8OFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	265	Right-handed 310
Helix 2	AA2	A	283	287	Right-handed 310
Helix 3	AA3	A	303	305	Right-handed 310
Helix 4	AA4	A	315	317	Right-handed 310
Helix 5	AA5	B	283	287	Right-handed 310
Helix 6	AA6	B	303	305	Right-handed 310
Helix 7	AA7	B	315	317	Right-handed 310
Helix 8	AA8	C	263	267	Right-handed 310
Helix 9	AA9	C	283	287	Right-handed 310
Helix 10	AB1	C	303	305	Right-handed 310
Helix 11	AB2	C	315	317	Right-handed 310
Helix 12	AB3	D	263	267	Right-handed 310
Helix 13	AB4	D	283	287	Right-handed 310
Helix 14	AB5	D	303	305	Right-handed 310
Helix 15	AB6	D	315	317	Right-handed 310
Helix 16	AB7	E	283	287	Right-handed 310
Helix 17	AB8	E	303	305	Right-handed 310
Helix 18	AB9	E	315	317	Right-handed 310
Helix 19	AC1	F	263	265	Right-handed 310
Helix 20	AC2	F	283	287	Right-handed 310
Helix 21	AC3	F	303	305	Right-handed 310
Helix 22	AC4	F	315	317	Right-handed 310

There are 18 sheets in PDB entry 8OFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	216	225	anti-parallel
Strand 6	A	358	363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	349	352	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	250	first strand
Strand 2	A	336	343	anti-parallel
Strand 3	A	321	328	anti-parallel
Strand 4	A	307	313	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	216	225	anti-parallel
Strand 6	B	358	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	349	352	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	250	first strand
Strand 2	B	336	343	anti-parallel
Strand 3	B	321	328	anti-parallel
Strand 4	B	307	313	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	185	187	anti-parallel
Strand 4	C	204	213	anti-parallel
Strand 5	C	216	225	anti-parallel
Strand 6	C	358	363	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	349	352	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	250	first strand
Strand 2	C	336	343	anti-parallel
Strand 3	C	321	328	anti-parallel
Strand 4	C	307	313	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	185	187	anti-parallel
Strand 4	D	204	213	anti-parallel
Strand 5	D	216	225	anti-parallel
Strand 6	D	358	363	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	234	first strand
Strand 2	D	349	352	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	250	first strand
Strand 2	D	336	343	anti-parallel
Strand 3	D	321	328	anti-parallel
Strand 4	D	307	313	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	275	first strand
Strand 2	E	268	271	anti-parallel
Strand 3	E	181	187	anti-parallel
Strand 4	E	204	213	anti-parallel
Strand 5	E	216	225	anti-parallel
Strand 6	E	358	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	234	first strand
Strand 2	E	349	352	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	250	first strand
Strand 2	E	336	343	anti-parallel
Strand 3	E	321	328	anti-parallel
Strand 4	E	307	313	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	275	first strand
Strand 2	F	267	271	anti-parallel
Strand 3	F	185	188	anti-parallel
Strand 4	F	204	213	anti-parallel
Strand 5	F	216	225	anti-parallel
Strand 6	F	358	363	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	234	first strand
Strand 2	F	349	352	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	250	first strand
Strand 2	F	336	343	anti-parallel
Strand 3	F	321	328	anti-parallel
Strand 4	F	307	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFU