Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OFV entry

There are 7 chains in PDB entry 8OFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 182	GLU 366
B	ASN 178	GLU 366
C	LYS 179	GLU 366
D	ASN 180	GLU 366
E	ASN 178	GLU 366
F	LYS 183	GLU 366
G	LYS 183	VAL 308

There are 38 helices in PDB entry 8OFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	267	Right-handed 310
Helix 2	AA2	A	283	287	Right-handed 310
Helix 3	AA3	A	303	305	Right-handed 310
Helix 4	AA4	A	315	317	Right-handed 310
Helix 5	AA5	B	283	287	Right-handed 310
Helix 6	AA6	B	303	305	Right-handed 310
Helix 7	AA7	B	315	317	Right-handed 310
Helix 8	AA8	C	283	287	Right-handed 310
Helix 9	AA9	C	303	305	Right-handed 310
Helix 10	AB1	C	315	317	Right-handed 310
Helix 11	AB2	D	283	287	Right-handed 310
Helix 12	AB3	D	303	305	Right-handed 310
Helix 13	AB4	D	315	317	Right-handed 310
Helix 14	AB5	E	283	287	Right-handed 310
Helix 15	AB6	E	303	305	Right-handed 310
Helix 16	AB7	E	315	317	Right-handed 310
Helix 17	AB8	F	282	287	Right-handed 310
Helix 18	AB9	F	303	305	Right-handed 310
Helix 19	AC1	F	315	317	Right-handed 310
Helix 20	AC2	G	283	287	Right-handed 310
Helix 21	AC3	G	303	305	Right-handed 310
Helix 22	AC4	G	315	317	Right-handed 310
Helix 23	AC5	H	283	287	Right-handed 310
Helix 24	AC6	H	303	305	Right-handed 310
Helix 25	AC7	H	315	317	Right-handed 310
Helix 26	AC8	I	283	287	Right-handed 310
Helix 27	AC9	I	303	305	Right-handed 310
Helix 28	AD1	I	315	317	Right-handed 310
Helix 29	AD2	J	263	267	Right-handed 310
Helix 30	AD3	J	283	287	Right-handed 310
Helix 31	AD4	J	303	305	Right-handed 310
Helix 32	AD5	J	315	317	Right-handed 310
Helix 33	AD6	K	283	287	Right-handed 310
Helix 34	AD7	K	303	305	Right-handed 310
Helix 35	AD8	K	315	317	Right-handed 310
Helix 36	AD9	L	282	287	Right-handed 310
Helix 37	AE1	L	303	305	Right-handed 310
Helix 38	AE2	L	315	317	Right-handed 310

There are 36 sheets in PDB entry 8OFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	185	187	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	216	225	anti-parallel
Strand 6	A	358	363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	349	352	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	250	first strand
Strand 2	A	336	343	anti-parallel
Strand 3	A	321	328	anti-parallel
Strand 4	A	307	313	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	181	187	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	216	225	anti-parallel
Strand 6	B	358	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	349	352	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	250	first strand
Strand 2	B	336	343	anti-parallel
Strand 3	B	321	328	anti-parallel
Strand 4	B	307	313	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	181	187	anti-parallel
Strand 4	C	204	213	anti-parallel
Strand 5	C	216	225	anti-parallel
Strand 6	C	358	363	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	349	352	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	250	first strand
Strand 2	C	336	343	anti-parallel
Strand 3	C	321	328	anti-parallel
Strand 4	C	307	313	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	181	187	anti-parallel
Strand 4	D	204	213	anti-parallel
Strand 5	D	216	225	anti-parallel
Strand 6	D	358	363	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	234	first strand
Strand 2	D	349	352	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	250	first strand
Strand 2	D	336	343	anti-parallel
Strand 3	D	321	328	anti-parallel
Strand 4	D	307	313	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	275	first strand
Strand 2	E	268	271	anti-parallel
Strand 3	E	181	187	anti-parallel
Strand 4	E	204	213	anti-parallel
Strand 5	E	216	225	anti-parallel
Strand 6	E	358	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	234	first strand
Strand 2	E	349	352	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	250	first strand
Strand 2	E	336	343	anti-parallel
Strand 3	E	321	328	anti-parallel
Strand 4	E	307	313	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	185	187	anti-parallel
Strand 3	F	204	213	anti-parallel
Strand 4	F	216	225	anti-parallel
Strand 5	F	358	363	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	234	first strand
Strand 2	F	349	352	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	250	first strand
Strand 2	F	336	343	anti-parallel
Strand 3	F	321	328	anti-parallel
Strand 4	F	307	313	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	269	first strand
Strand 2	G	185	188	anti-parallel
Strand 3	G	204	213	anti-parallel
Strand 4	G	216	225	anti-parallel
Strand 5	G	358	363	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	234	first strand
Strand 2	G	349	352	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	243	250	first strand
Strand 2	G	336	343	anti-parallel
Strand 3	G	321	328	anti-parallel
Strand 4	G	307	313	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	274	275	first strand
Strand 2	H	268	271	anti-parallel
Strand 3	H	181	187	anti-parallel
Strand 4	H	204	213	anti-parallel
Strand 5	H	216	225	anti-parallel
Strand 6	H	358	363	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	234	first strand
Strand 2	H	349	352	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	250	first strand
Strand 2	H	336	343	anti-parallel
Strand 3	H	321	328	anti-parallel
Strand 4	H	307	313	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	274	275	first strand
Strand 2	I	268	271	anti-parallel
Strand 3	I	181	187	anti-parallel
Strand 4	I	204	213	anti-parallel
Strand 5	I	216	225	anti-parallel
Strand 6	I	358	363	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	232	234	first strand
Strand 2	I	349	352	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	243	250	first strand
Strand 2	I	336	343	anti-parallel
Strand 3	I	321	328	anti-parallel
Strand 4	I	307	313	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	274	275	first strand
Strand 2	J	268	271	anti-parallel
Strand 3	J	185	187	anti-parallel
Strand 4	J	204	213	anti-parallel
Strand 5	J	216	225	anti-parallel
Strand 6	J	358	363	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	232	234	first strand
Strand 2	J	349	352	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	243	250	first strand
Strand 2	J	336	343	anti-parallel
Strand 3	J	321	328	anti-parallel
Strand 4	J	307	313	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	274	275	first strand
Strand 2	K	268	271	anti-parallel
Strand 3	K	181	187	anti-parallel
Strand 4	K	204	213	anti-parallel
Strand 5	K	216	225	anti-parallel
Strand 6	K	358	363	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	234	first strand
Strand 2	K	349	352	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	243	250	first strand
Strand 2	K	336	343	anti-parallel
Strand 3	K	321	328	anti-parallel
Strand 4	K	307	313	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	267	269	first strand
Strand 2	L	185	188	anti-parallel
Strand 3	L	204	213	anti-parallel
Strand 4	L	216	225	anti-parallel
Strand 5	L	358	363	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	232	234	first strand
Strand 2	L	349	352	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	243	250	first strand
Strand 2	L	336	343	anti-parallel
Strand 3	L	321	328	anti-parallel
Strand 4	L	307	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFV