Analysis of interatomic Contacts of Structural Units in PDB entry:
8OFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OFW entry

There are 2 chains in PDB entry 8OFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3GLN 355
B
 PRO 3ARG 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8OFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 10Right-handed alpha
Helix 2
AA2
A
13 29Right-handed alpha
Helix 3
AA3
A
31 42Right-handed alpha
Helix 4
AA4
A
46 50Right-handed 310
Helix 5
AA5
A
76 82Right-handed alpha
Helix 6
AA6
A
122 131Right-handed alpha
Helix 7
AA7
A
151 167Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
190 205Right-handed alpha
Helix 10
AB1
A
218 233Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
264 283Right-handed alpha
Helix 13
AB4
A
296 305Right-handed alpha
Helix 14
AB5
A
314 321Right-handed alpha
Helix 15
AB6
A
321 339Right-handed alpha
Helix 16
AB7
A
343 348Right-handed alpha
Helix 17
AB8
A
349 354Right-handed alpha
Helix 18
AB9
B
4 12Right-handed alpha
Helix 19
AC1
B
13 29Right-handed alpha
Helix 20
AC2
B
31 41Right-handed alpha
Helix 21
AC3
B
76 82Right-handed alpha
Helix 22
AC4
B
123 131Right-handed alpha
Helix 23
AC5
B
154 167Right-handed alpha
Helix 24
AC6
B
168 170Right-handed 310
Helix 25
AC7
B
184 189Right-handed alpha
Helix 26
AC8
B
190 205Right-handed alpha
Helix 27
AC9
B
218 233Right-handed alpha
Helix 28
AD1
B
253 258Right-handed alpha
Helix 29
AD2
B
264 281Right-handed alpha
Helix 30
AD3
B
296 305Right-handed alpha
Helix 31
AD4
B
314 321Right-handed alpha
Helix 32
AD5
B
321 339Right-handed alpha
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There are 6 sheets in PDB entry 8OFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
56 58anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
85 92parallel
Strand 3
A
140 145parallel
Strand 4
A
172 176parallel
Strand 5
A
209 212parallel
Strand 6
A
236 239parallel
Strand 7
A
287 291parallel
Strand 8
A
310 313parallel
Strand 9
A
62 64parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
112 114anti-parallel
Strand 3
A
262 263anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
56 58anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
86 92parallel
Strand 3
B
140 145parallel
Strand 4
B
172 176parallel
Strand 5
B
209 212parallel
Strand 6
B
236 239parallel
Strand 7
B
288 291parallel
Strand 8
B
310 313parallel
Strand 9
B
62 64parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
112 115anti-parallel
Strand 3
B
261 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il