Analysis of interatomic Contacts of Structural Units in PDB entry:
8OG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OG0 entry

There are 3 chains in PDB entry 8OG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 1CYS 216
H
 GLN 1THR 222
P
 TYR 136ALA 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8OG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
28 32Right-handed 310
Helix 2
AA2
L
80 84Right-handed 310
Helix 3
AA3
L
126 131Right-handed alpha
Helix 4
AA4
L
187 191Right-handed alpha
Helix 5
AA5
L
214 216Right-handed 310
Helix 6
AA6
H
64 67Right-handed 310
Helix 7
AA7
H
88 92Right-handed 310
Helix 8
AA8
H
105 110Right-handed alpha
Helix 9
AA9
H
165 167Right-handed 310
Helix 10
AB1
H
208 211Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8OG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 5first strand
Strand 2
L
18 24anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
107 112parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
107 112parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
101 103anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
134 144anti-parallel
Strand 3
L
177 186anti-parallel
Strand 4
L
163 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
157 158first strand
Strand 2
L
149 154anti-parallel
Strand 3
L
195 202anti-parallel
Strand 4
L
205 212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
70 76anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
116 120parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
33 40anti-parallel
Strand 5
H
46 53anti-parallel
Strand 6
H
60 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
116 120parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
146 154anti-parallel
Strand 3
H
185 192anti-parallel
Strand 4
H
172 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
146 154anti-parallel
Strand 3
H
185 192anti-parallel
Strand 4
H
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 163first strand
Strand 2
H
202 207anti-parallel
Strand 3
H
212 217anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il