Analysis of interatomic Contacts of Structural Units in PDB entry:
8OG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OG4 entry

There are 4 chains in PDB entry 8OG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 154	ASN 605
A	ALA 607	ILE 919
B	SER 154	ASN 605
B	ALA 607	ILE 919

There are 55 helices in PDB entry 8OG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	170	176	Right-handed alpha
Helix 2	AA2	A	178	183	Right-handed alpha
Helix 3	AA3	A	184	188	Right-handed 310
Helix 4	AA4	A	200	204	Right-handed 310
Helix 5	AA5	A	205	210	Right-handed alpha
Helix 6	AA6	A	211	224	Right-handed alpha
Helix 7	AA7	A	252	262	Right-handed alpha
Helix 8	AA8	A	327	331	Right-handed 310
Helix 9	AA9	A	375	390	Right-handed alpha
Helix 10	AB1	A	417	426	Right-handed alpha
Helix 11	AB2	A	444	457	Right-handed alpha
Helix 12	AB3	A	477	481	Right-handed 310
Helix 13	AB4	A	486	491	Right-handed 310
Helix 14	AB5	A	492	499	Right-handed alpha
Helix 15	AB6	A	501	520	Right-handed alpha
Helix 16	AB7	A	522	538	Right-handed alpha
Helix 17	AB8	A	591	597	Right-handed alpha
Helix 18	AB9	A	599	606	Right-handed alpha
Helix 19	AC1	A	626	630	Right-handed 310
Helix 20	AC2	A	638	643	Right-handed 310
Helix 21	AC3	A	646	652	Right-handed alpha
Helix 22	AC4	A	672	683	Right-handed alpha
Helix 23	AC5	A	724	730	Right-handed 310
Helix 24	AC6	A	750	762	Right-handed alpha
Helix 25	AC7	A	807	816	Right-handed alpha
Helix 26	AC8	A	818	829	Right-handed alpha
Helix 27	AC9	A	831	845	Right-handed alpha
Helix 28	AD1	A	870	888	Right-handed alpha
Helix 29	AD2	B	170	176	Right-handed alpha
Helix 30	AD3	B	178	183	Right-handed alpha
Helix 31	AD4	B	184	188	Right-handed 310
Helix 32	AD5	B	200	204	Right-handed 310
Helix 33	AD6	B	205	210	Right-handed alpha
Helix 34	AD7	B	211	224	Right-handed alpha
Helix 35	AD8	B	252	262	Right-handed alpha
Helix 36	AD9	B	327	331	Right-handed 310
Helix 37	AE1	B	375	390	Right-handed alpha
Helix 38	AE2	B	417	426	Right-handed alpha
Helix 39	AE3	B	444	457	Right-handed alpha
Helix 40	AE4	B	477	481	Right-handed 310
Helix 41	AE5	B	486	491	Right-handed 310
Helix 42	AE6	B	492	500	Right-handed alpha
Helix 43	AE7	B	501	520	Right-handed alpha
Helix 44	AE8	B	522	538	Right-handed alpha
Helix 45	AE9	B	591	597	Right-handed alpha
Helix 46	AF1	B	599	606	Right-handed alpha
Helix 47	AF2	B	638	643	Right-handed 310
Helix 48	AF3	B	646	653	Right-handed alpha
Helix 49	AF4	B	672	683	Right-handed alpha
Helix 50	AF5	B	724	730	Right-handed 310
Helix 51	AF6	B	750	762	Right-handed alpha
Helix 52	AF7	B	807	816	Right-handed alpha
Helix 53	AF8	B	818	829	Right-handed alpha
Helix 54	AF9	B	831	845	Right-handed alpha
Helix 55	AG1	B	870	888	Right-handed alpha

There are 13 sheets in PDB entry 8OG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	237	243	parallel
Strand 3	A	273	277	parallel
Strand 4	A	297	300	parallel
Strand 5	A	314	315	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	441	443	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	341	346	parallel
Strand 3	A	428	434	parallel
Strand 4	A	460	464	parallel
Strand 5	A	483	485	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	557	first strand
Strand 2	A	707	708	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	719	first strand
Strand 2	A	689	696	parallel
Strand 3	A	663	669	parallel
Strand 4	A	739	744	parallel
Strand 5	A	802	806	anti-parallel
Strand 6	A	769	770	anti-parallel
Strand 7	A	849	850	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	788	first strand
Strand 2	A	773	779	anti-parallel
Strand 3	A	797	798	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	898	900	first strand
Strand 2	B	898	900	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	237	243	parallel
Strand 3	B	273	277	parallel
Strand 4	B	297	300	parallel
Strand 5	B	314	315	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	441	443	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	341	346	parallel
Strand 3	B	428	434	parallel
Strand 4	B	460	464	parallel
Strand 5	B	483	485	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	552	first strand
Strand 2	B	715	719	anti-parallel
Strand 3	B	689	696	parallel
Strand 4	B	663	669	parallel
Strand 5	B	739	744	parallel
Strand 6	B	802	806	anti-parallel
Strand 7	B	769	770	anti-parallel
Strand 8	B	849	850	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	557	first strand
Strand 2	B	707	708	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	788	first strand
Strand 2	B	773	779	anti-parallel
Strand 3	B	797	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OG4