Analysis of interatomic Contacts of Structural Units in PDB entry:
8OGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OGG entry

There is 1 chain in PDB entry 8OGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASN 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8OGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
37 49Right-handed alpha
Helix 3
AA3
A
50 52Right-handed 310
Helix 4
AA4
A
61 71Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
87 91Right-handed 310
Helix 7
AA7
A
115 119Right-handed 310
Helix 8
AA8
A
121 131Right-handed 310
Helix 9
AA9
A
141 170Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
A
198 206Right-handed alpha
Helix 12
AB3
A
210 219Right-handed alpha
Helix 13
AB4
A
243 256Right-handed alpha
Helix 14
AB5
A
256 268Right-handed alpha
Helix 15
AB6
A
278 284Right-handed alpha
Helix 16
AB7
A
293 300Right-handed alpha
Helix 17
AB8
A
300 312Right-handed alpha
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There are 2 sheets in PDB entry 8OGG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
4 9parallel
Strand 3
A
56 60parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
98 109anti-parallel
Strand 6
A
193 197anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
4 9parallel
Strand 3
A
56 60parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
98 109anti-parallel
Strand 6
A
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il