Analysis of interatomic Contacts of Structural Units in PDB entry:
8OGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OGH entry

There are 2 chains in PDB entry 8OGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLY 626
B
 MET -1THR 625
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 8OGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
7 12Right-handed 310
Helix 3
AA3
A
15 38Right-handed alpha
Helix 4
AA4
A
40 46Right-handed alpha
Helix 5
AA5
A
47 58Right-handed alpha
Helix 6
AA6
A
73 79Right-handed alpha
Helix 7
AA7
A
80 81Right-handed 310
Helix 8
AA8
A
82 89Right-handed 310
Helix 9
AA9
A
116 131Right-handed alpha
Helix 10
AB1
A
145 148Right-handed 310
Helix 11
AB2
A
149 161Right-handed alpha
Helix 12
AB3
A
254 269Right-handed alpha
Helix 13
AB4
A
315 331Right-handed alpha
Helix 14
AB5
A
347 354Right-handed alpha
Helix 15
AB6
A
364 378Right-handed alpha
Helix 16
AB7
A
387 393Right-handed 310
Helix 17
AB8
A
394 401Right-handed alpha
Helix 18
AB9
A
430 436Right-handed alpha
Helix 19
AC1
A
448 461Right-handed alpha
Helix 20
AC2
A
511 525Right-handed alpha
Helix 21
AC3
A
541 549Right-handed alpha
Helix 22
AC4
A
565 577Right-handed alpha
Helix 23
AC5
A
597 605Right-handed alpha
Helix 24
AC6
A
608 622Right-handed alpha
Helix 25
AC7
B
1 5Right-handed 310
Helix 26
AC8
B
7 12Right-handed 310
Helix 27
AC9
B
15 35Right-handed alpha
Helix 28
AD1
B
40 46Right-handed alpha
Helix 29
AD2
B
47 58Right-handed alpha
Helix 30
AD3
B
73 79Right-handed alpha
Helix 31
AD4
B
80 81Right-handed 310
Helix 32
AD5
B
82 89Right-handed 310
Helix 33
AD6
B
116 131Right-handed alpha
Helix 34
AD7
B
145 148Right-handed 310
Helix 35
AD8
B
149 160Right-handed alpha
Helix 36
AD9
B
254 269Right-handed alpha
Helix 37
AE1
B
284 288Right-handed 310
Helix 38
AE2
B
315 331Right-handed alpha
Helix 39
AE3
B
347 354Right-handed alpha
Helix 40
AE4
B
364 378Right-handed alpha
Helix 41
AE5
B
387 393Right-handed 310
Helix 42
AE6
B
394 401Right-handed alpha
Helix 43
AE7
B
430 436Right-handed alpha
Helix 44
AE8
B
448 461Right-handed alpha
Helix 45
AE9
B
511 525Right-handed alpha
Helix 46
AF1
B
541 549Right-handed alpha
Helix 47
AF2
B
565 577Right-handed alpha
Helix 48
AF3
B
597 605Right-handed alpha
Helix 49
AF4
B
608 624Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8OGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
138 143parallel
Strand 3
A
166 172parallel
Strand 4
A
272 277parallel
Strand 5
A
245 251parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
334 338parallel
Strand 3
A
381 385parallel
Strand 4
A
410 413parallel
Strand 5
A
467 470parallel
Strand 6
A
442 444parallel
Strand 7
A
536 538anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
489 493anti-parallel
Strand 3
A
529 533anti-parallel
Strand 4
A
503 507parallel
Strand 5
A
553 561parallel
Strand 6
A
583 588parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
138 143parallel
Strand 3
B
166 172parallel
Strand 4
B
272 277parallel
Strand 5
B
245 251parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
334 338parallel
Strand 3
B
381 385parallel
Strand 4
B
410 413parallel
Strand 5
B
467 470parallel
Strand 6
B
442 444parallel
Strand 7
B
536 538anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
489 493anti-parallel
Strand 3
B
529 533anti-parallel
Strand 4
B
503 507parallel
Strand 5
B
553 561parallel
Strand 6
B
583 588parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il