Analysis of interatomic Contacts of Structural Units in PDB entry:
8OGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OGS entry

There are 2 chains in PDB entry 8OGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 103GLU 252
B
 PRO 102GLU 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8OGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 127Right-handed alpha
Helix 2
AA2
A
140 145Right-handed alpha
Helix 3
AA3
A
155 164Right-handed alpha
Helix 4
AA4
A
201 214Right-handed alpha
Helix 5
AA5
A
241 252Right-handed alpha
Helix 6
AA6
B
103 127Right-handed alpha
Helix 7
AA7
B
140 145Right-handed alpha
Helix 8
AA8
B
155 164Right-handed alpha
Helix 9
AA9
B
201 212Right-handed alpha
Helix 10
AB1
B
241 252Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8OGS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
130 134parallel
Strand 5
A
217 221anti-parallel
Strand 6
A
228 232anti-parallel
Strand 7
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 153first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
173 177anti-parallel
Strand 4
B
130 134parallel
Strand 5
B
217 221anti-parallel
Strand 6
B
228 232anti-parallel
Strand 7
B
235 237anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il