Analysis of interatomic Contacts of Structural Units in PDB entry:
8OI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OI3 entry

There are 4 chains in PDB entry 8OI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 829ALA 1011
B
 PRO 829ALA 1011
C
 ALA 15GLY 91
D
 ALA 15GLY 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8OI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
839 857Right-handed alpha
Helix 2
AA2
A
857 863Right-handed alpha
Helix 3
AA3
A
868 876Right-handed alpha
Helix 4
AA4
A
879 891Right-handed alpha
Helix 5
AA5
A
892 895Right-handed 310
Helix 6
AA6
A
942 953Right-handed alpha
Helix 7
AA7
A
970 988Right-handed alpha
Helix 8
AA8
A
1001 1011Right-handed alpha
Helix 9
AA9
B
839 857Right-handed alpha
Helix 10
AB1
B
857 863Right-handed alpha
Helix 11
AB2
B
868 876Right-handed alpha
Helix 12
AB3
B
879 891Right-handed alpha
Helix 13
AB4
B
892 895Right-handed 310
Helix 14
AB5
B
942 953Right-handed alpha
Helix 15
AB6
B
970 988Right-handed alpha
Helix 16
AB7
B
1001 1010Right-handed alpha
Helix 17
AB8
C
39 51Right-handed alpha
Helix 18
AB9
C
53 55Right-handed 310
Helix 19
AC1
C
71 76Right-handed alpha
Helix 20
AC2
D
39 51Right-handed alpha
Helix 21
AC3
D
53 55Right-handed 310
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There are 6 sheets in PDB entry 8OI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 838first strand
Strand 2
D
90 91anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
864 866first strand
Strand 2
A
897 903parallel
Strand 3
A
917 923anti-parallel
Strand 4
A
931 935anti-parallel
Strand 5
A
956 960parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
837 838first strand
Strand 2
C
90 91anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
864 866first strand
Strand 2
B
897 903parallel
Strand 3
B
917 923anti-parallel
Strand 4
B
931 935anti-parallel
Strand 5
B
956 959parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 34first strand
Strand 2
C
16 23anti-parallel
Strand 3
C
82 87parallel
Strand 4
C
57 61anti-parallel
Strand 5
C
64 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 34first strand
Strand 2
D
16 23anti-parallel
Strand 3
D
81 87parallel
Strand 4
D
57 61anti-parallel
Strand 5
D
64 65anti-parallel
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