Analysis of interatomic Contacts of Structural Units in PDB entry:
8OI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OI7 entry

There are 2 chains in PDB entry 8OI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 346
B
 SER 2ILE 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8OI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
41 56Right-handed alpha
Helix 3
AA3
A
93 99Right-handed alpha
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
118 121Right-handed 310
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
156 160Right-handed 310
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
188 198Right-handed alpha
Helix 12
AB3
A
207 212Right-handed alpha
Helix 13
AB4
A
217 229Right-handed alpha
Helix 14
AB5
A
232 244Right-handed alpha
Helix 15
AB6
A
246 255Right-handed alpha
Helix 16
AB7
A
263 272Right-handed alpha
Helix 17
AB8
A
273 276Right-handed 310
Helix 18
AB9
A
299 306Right-handed alpha
Helix 19
AC1
A
307 310Right-handed 310
Helix 20
AC2
A
325 346Right-handed alpha
Helix 21
AC3
B
12 25Right-handed alpha
Helix 22
AC4
B
41 56Right-handed alpha
Helix 23
AC5
B
80 84Right-handed 310
Helix 24
AC6
B
93 99Right-handed alpha
Helix 25
AC7
B
104 110Right-handed alpha
Helix 26
AC8
B
113 117Right-handed 310
Helix 27
AC9
B
118 120Right-handed 310
Helix 28
AD1
B
121 133Right-handed alpha
Helix 29
AD2
B
145 155Right-handed alpha
Helix 30
AD3
B
156 160Right-handed 310
Helix 31
AD4
B
182 187Right-handed alpha
Helix 32
AD5
B
188 198Right-handed alpha
Helix 33
AD6
B
207 212Right-handed alpha
Helix 34
AD7
B
217 229Right-handed alpha
Helix 35
AD8
B
232 244Right-handed alpha
Helix 36
AD9
B
246 255Right-handed alpha
Helix 37
AE1
B
263 272Right-handed alpha
Helix 38
AE2
B
273 276Right-handed 310
Helix 39
AE3
B
299 306Right-handed alpha
Helix 40
AE4
B
307 310Right-handed 310
Helix 41
AE5
B
325 345Right-handed alpha
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There are 4 sheets in PDB entry 8OI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
28 35parallel
Strand 3
A
3 9parallel
Strand 4
A
137 141parallel
Strand 5
A
162 166parallel
Strand 6
A
201 204parallel
Strand 7
A
316 318parallel
Strand 8
A
279 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
296 298anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
28 35parallel
Strand 3
B
3 9parallel
Strand 4
B
137 141parallel
Strand 5
B
162 166parallel
Strand 6
B
201 204parallel
Strand 7
B
316 318parallel
Strand 8
B
279 281anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
296 298anti-parallel
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