Analysis of interatomic Contacts of Structural Units in PDB entry:
8OIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OIA entry

There are 4 chains in PDB entry 8OIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 346
B
 SER 2GLY 346
C
 SER 2GLY 346
D
 SER 2LEU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8OIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
41 56Right-handed alpha
Helix 3
AA3
A
93 99Right-handed alpha
Helix 4
AA4
A
103 110Right-handed alpha
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
122 133Right-handed alpha
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
156 160Right-handed 310
Helix 9
AA9
A
182 187Right-handed alpha
Helix 10
AB1
A
188 198Right-handed alpha
Helix 11
AB2
A
207 212Right-handed alpha
Helix 12
AB3
A
217 229Right-handed alpha
Helix 13
AB4
A
232 245Right-handed alpha
Helix 14
AB5
A
246 253Right-handed alpha
Helix 15
AB6
A
263 272Right-handed alpha
Helix 16
AB7
A
273 276Right-handed 310
Helix 17
AB8
A
325 346Right-handed alpha
Helix 18
AB9
B
12 25Right-handed alpha
Helix 19
AC1
B
41 56Right-handed alpha
Helix 20
AC2
B
79 84Right-handed alpha
Helix 21
AC3
B
93 99Right-handed alpha
Helix 22
AC4
B
103 110Right-handed alpha
Helix 23
AC5
B
113 117Right-handed 310
Helix 24
AC6
B
122 133Right-handed alpha
Helix 25
AC7
B
145 155Right-handed alpha
Helix 26
AC8
B
156 160Right-handed 310
Helix 27
AC9
B
182 187Right-handed alpha
Helix 28
AD1
B
188 198Right-handed alpha
Helix 29
AD2
B
207 212Right-handed alpha
Helix 30
AD3
B
217 229Right-handed alpha
Helix 31
AD4
B
232 255Right-handed alpha
Helix 32
AD5
B
263 272Right-handed alpha
Helix 33
AD6
B
273 276Right-handed 310
Helix 34
AD7
B
299 306Right-handed alpha
Helix 35
AD8
B
307 310Right-handed 310
Helix 36
AD9
B
325 346Right-handed alpha
Helix 37
AE1
C
12 25Right-handed alpha
Helix 38
AE2
C
41 56Right-handed alpha
Helix 39
AE3
C
79 84Right-handed alpha
Helix 40
AE4
C
93 99Right-handed alpha
Helix 41
AE5
C
103 110Right-handed alpha
Helix 42
AE6
C
113 117Right-handed 310
Helix 43
AE7
C
122 133Right-handed alpha
Helix 44
AE8
C
145 155Right-handed alpha
Helix 45
AE9
C
156 160Right-handed 310
Helix 46
AF1
C
182 187Right-handed alpha
Helix 47
AF2
C
188 198Right-handed alpha
Helix 48
AF3
C
207 212Right-handed alpha
Helix 49
AF4
C
217 229Right-handed alpha
Helix 50
AF5
C
232 255Right-handed alpha
Helix 51
AF6
C
263 272Right-handed alpha
Helix 52
AF7
C
273 276Right-handed 310
Helix 53
AF8
C
299 306Right-handed alpha
Helix 54
AF9
C
307 310Right-handed 310
Helix 55
AG1
C
325 346Right-handed alpha
Helix 56
AG2
D
12 25Right-handed alpha
Helix 57
AG3
D
41 56Right-handed alpha
Helix 58
AG4
D
93 99Right-handed alpha
Helix 59
AG5
D
103 110Right-handed alpha
Helix 60
AG6
D
113 117Right-handed 310
Helix 61
AG7
D
122 133Right-handed alpha
Helix 62
AG8
D
145 155Right-handed alpha
Helix 63
AG9
D
156 160Right-handed 310
Helix 64
AH1
D
182 187Right-handed alpha
Helix 65
AH2
D
188 198Right-handed alpha
Helix 66
AH3
D
207 212Right-handed alpha
Helix 67
AH4
D
217 229Right-handed alpha
Helix 68
AH5
D
232 245Right-handed alpha
Helix 69
AH6
D
246 253Right-handed alpha
Helix 70
AH7
D
263 272Right-handed alpha
Helix 71
AH8
D
273 276Right-handed 310
Helix 72
AH9
D
325 346Right-handed alpha
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There are 8 sheets in PDB entry 8OIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
28 35parallel
Strand 3
A
3 9parallel
Strand 4
A
137 141parallel
Strand 5
A
162 166parallel
Strand 6
A
201 204parallel
Strand 7
A
316 318parallel
Strand 8
A
279 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
296 297anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
28 35parallel
Strand 3
B
3 9parallel
Strand 4
B
137 141parallel
Strand 5
B
162 166parallel
Strand 6
B
201 204parallel
Strand 7
B
316 318parallel
Strand 8
B
279 281anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
296 298anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
28 35parallel
Strand 3
C
3 9parallel
Strand 4
C
137 141parallel
Strand 5
C
162 166parallel
Strand 6
C
201 204parallel
Strand 7
C
316 318parallel
Strand 8
C
279 281anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 285first strand
Strand 2
C
296 298anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 66first strand
Strand 2
D
28 35parallel
Strand 3
D
3 9parallel
Strand 4
D
137 141parallel
Strand 5
D
162 166parallel
Strand 6
D
201 204parallel
Strand 7
D
316 318parallel
Strand 8
D
279 281anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
284 285first strand
Strand 2
D
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il