Analysis of interatomic Contacts of Structural Units in PDB entry:
8OIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OIF entry

There are 3 chains in PDB entry 8OIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33LEU 1012
I
 ASP 79GLY 157
L
 MET 2PRO 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8OIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 55Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
86 100Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
130 143Right-handed alpha
Helix 6
AA6
A
266 271Right-handed alpha
Helix 7
AA7
A
281 305Right-handed alpha
Helix 8
AA8
A
312 324Right-handed alpha
Helix 9
AA9
A
342 353Right-handed alpha
Helix 10
AB1
A
357 375Right-handed alpha
Helix 11
AB2
A
415 420Right-handed alpha
Helix 12
AB3
A
423 433Right-handed alpha
Helix 13
AB4
A
441 455Right-handed alpha
Helix 14
AB5
A
473 480Right-handed 310
Helix 15
AB6
A
484 488Right-handed 310
Helix 16
AB7
A
491 504Right-handed alpha
Helix 17
AB8
A
525 532Right-handed alpha
Helix 18
AB9
A
542 556Right-handed alpha
Helix 19
AC1
A
585 592Right-handed alpha
Helix 20
AC2
A
611 615Right-handed 310
Helix 21
AC3
A
853 872Right-handed alpha
Helix 22
AC4
A
889 891Right-handed 310
Helix 23
AC5
A
927 939Right-handed alpha
Helix 24
AC6
A
959 967Right-handed alpha
Helix 25
AC7
A
970 979Right-handed alpha
Helix 26
AC8
I
103 116Right-handed alpha
Helix 27
AC9
I
136 141Right-handed alpha
Helix 28
AD1
L
4 17Right-handed alpha
Helix 29
AD2
L
100 114Right-handed alpha
Helix 30
AD3
L
122 132Right-handed alpha
Helix 31
AD4
L
132 147Right-handed alpha
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There are 8 sheets in PDB entry 8OIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
58 62parallel
Strand 3
A
34 38parallel
Strand 4
A
121 125parallel
Strand 5
A
145 152parallel
Strand 6
A
155 161anti-parallel
Strand 7
A
386 389anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
260 262anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
253 255anti-parallel
Strand 3
A
208 210anti-parallel
Strand 4
A
226 227anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 512first strand
Strand 2
A
463 467parallel
Strand 3
A
434 438parallel
Strand 4
A
535 537parallel
Strand 5
A
559 565parallel
Strand 6
A
568 574anti-parallel
Strand 7
A
883 887anti-parallel
Strand 8
A
892 896anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 906first strand
Strand 2
A
909 911anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 919first strand
Strand 2
A
1008 1011parallel
Strand 3
A
989 995anti-parallel
Strand 4
A
945 948anti-parallel
Strand 5
A
951 955anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
93 98first strand
Strand 2
I
82 87anti-parallel
Strand 3
I
147 152parallel
Strand 4
I
122 125anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 26first strand
Strand 2
L
36 39anti-parallel
Strand 3
L
51 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il