Analysis of interatomic Contacts of Structural Units in PDB entry:
8OIG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OIG entry

There are 3 chains in PDB entry 8OIG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	TYR 173
B	ARG 1	TYR 173
C	ARG 1	TYR 173

There are 15 helices in PDB entry 8OIG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	37	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	55	62	Right-handed alpha
Helix 4	AA4	A	65	76	Right-handed alpha
Helix 5	AA5	A	88	98	Right-handed alpha
Helix 6	AA6	B	22	36	Right-handed alpha
Helix 7	AA7	B	42	51	Right-handed alpha
Helix 8	AA8	B	55	62	Right-handed alpha
Helix 9	AA9	B	65	76	Right-handed alpha
Helix 10	AB1	B	88	98	Right-handed alpha
Helix 11	AB2	C	22	37	Right-handed alpha
Helix 12	AB3	C	42	51	Right-handed alpha
Helix 13	AB4	C	55	62	Right-handed alpha
Helix 14	AB5	C	65	76	Right-handed alpha
Helix 15	AB6	C	88	98	Right-handed alpha

There are 6 sheets in PDB entry 8OIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	118	129	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	163	173	anti-parallel
Strand 5	A	134	139	first strand
Strand 6	A	147	150	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	163	173	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	118	129	anti-parallel
Strand 5	A	155	157	first strand

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	118	129	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	163	173	anti-parallel
Strand 5	B	134	139	first strand
Strand 6	B	147	150	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	163	173	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	118	129	anti-parallel
Strand 5	B	155	157	first strand

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	118	129	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	163	173	anti-parallel
Strand 5	C	134	139	first strand
Strand 6	C	147	150	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	163	173	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	118	129	anti-parallel
Strand 5	C	155	157	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OIG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OIG