Analysis of interatomic Contacts of Structural Units in PDB entry:
8OII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OII entry

There are 2 chains in PDB entry 8OII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 30	ALA 932
B	GLU 30	ALA 932

There are 64 helices in PDB entry 8OII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	59	Right-handed alpha
Helix 2	AA2	A	73	77	Right-handed 310
Helix 3	AA3	A	110	117	Right-handed alpha
Helix 4	AA4	A	118	135	Right-handed alpha
Helix 5	AA5	A	138	147	Right-handed alpha
Helix 6	AA6	A	161	172	Right-handed alpha
Helix 7	AA7	A	182	193	Right-handed alpha
Helix 8	AA8	A	203	205	Right-handed 310
Helix 9	AA9	A	206	221	Right-handed alpha
Helix 10	AB1	A	237	247	Right-handed alpha
Helix 11	AB2	A	281	288	Right-handed alpha
Helix 12	AB3	A	313	329	Right-handed alpha
Helix 13	AB4	A	331	333	Right-handed 310
Helix 14	AB5	A	347	362	Right-handed alpha
Helix 15	AB6	A	375	380	Right-handed alpha
Helix 16	AB7	A	382	384	Right-handed 310
Helix 17	AB8	A	385	401	Right-handed alpha
Helix 18	AB9	A	480	484	Right-handed 310
Helix 19	AC1	A	493	510	Right-handed alpha
Helix 20	AC2	A	513	525	Right-handed alpha
Helix 21	AC3	A	538	551	Right-handed alpha
Helix 22	AC4	A	582	593	Right-handed alpha
Helix 23	AC5	A	598	603	Right-handed 310
Helix 24	AC6	A	636	641	Right-handed alpha
Helix 25	AC7	A	665	670	Right-handed 310
Helix 26	AC8	A	685	698	Right-handed alpha
Helix 27	AC9	A	718	720	Right-handed 310
Helix 28	AD1	A	769	786	Right-handed alpha
Helix 29	AD2	A	792	803	Right-handed alpha
Helix 30	AD3	A	845	864	Right-handed alpha
Helix 31	AD4	A	927	932	Right-handed alpha
Helix 32	AD5	B	49	60	Right-handed alpha
Helix 33	AD6	B	73	78	Right-handed alpha
Helix 34	AD7	B	110	117	Right-handed alpha
Helix 35	AD8	B	118	135	Right-handed alpha
Helix 36	AD9	B	138	147	Right-handed alpha
Helix 37	AE1	B	161	172	Right-handed alpha
Helix 38	AE2	B	182	193	Right-handed alpha
Helix 39	AE3	B	203	205	Right-handed 310
Helix 40	AE4	B	206	221	Right-handed alpha
Helix 41	AE5	B	237	247	Right-handed alpha
Helix 42	AE6	B	281	288	Right-handed alpha
Helix 43	AE7	B	313	329	Right-handed alpha
Helix 44	AE8	B	331	333	Right-handed 310
Helix 45	AE9	B	347	362	Right-handed alpha
Helix 46	AF1	B	375	380	Right-handed alpha
Helix 47	AF2	B	382	384	Right-handed 310
Helix 48	AF3	B	385	401	Right-handed alpha
Helix 49	AF4	B	417	421	Right-handed 310
Helix 50	AF5	B	457	459	Right-handed 310
Helix 51	AF6	B	480	483	Right-handed 310
Helix 52	AF7	B	493	510	Right-handed alpha
Helix 53	AF8	B	513	525	Right-handed alpha
Helix 54	AF9	B	538	552	Right-handed alpha
Helix 55	AG1	B	582	593	Right-handed alpha
Helix 56	AG2	B	598	603	Right-handed 310
Helix 57	AG3	B	636	641	Right-handed alpha
Helix 58	AG4	B	665	670	Right-handed 310
Helix 59	AG5	B	685	698	Right-handed alpha
Helix 60	AG6	B	718	720	Right-handed 310
Helix 61	AG7	B	769	786	Right-handed alpha
Helix 62	AG8	B	792	803	Right-handed alpha
Helix 63	AG9	B	845	864	Right-handed alpha
Helix 64	AH1	B	927	932	Right-handed alpha

There are 9 sheets in PDB entry 8OII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	335	339	parallel
Strand 3	A	449	455	parallel
Strand 4	A	461	467	anti-parallel
Strand 5	A	294	301	anti-parallel
Strand 6	A	35	43	anti-parallel
Strand 7	A	272	280	anti-parallel
Strand 8	A	226	233	anti-parallel
Strand 9	A	150	154	parallel
Strand 10	A	198	202	parallel
Strand 11	B	198	202	anti-parallel
Strand 12	B	150	154	parallel
Strand 13	B	226	233	parallel
Strand 14	B	272	280	anti-parallel
Strand 15	B	35	43	anti-parallel
Strand 16	B	293	301	anti-parallel
Strand 17	B	460	467	anti-parallel
Strand 18	B	449	456	anti-parallel
Strand 19	B	335	339	parallel
Strand 20	B	372	373	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	430	431	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	A	530	536	anti-parallel
Strand 3	A	560	566	anti-parallel
Strand 4	A	571	573	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	662	first strand
Strand 2	A	722	733	anti-parallel
Strand 3	A	736	745	anti-parallel
Strand 4	A	751	760	anti-parallel
Strand 5	A	706	711	anti-parallel
Strand 6	A	872	880	anti-parallel
Strand 7	A	915	925	anti-parallel
Strand 8	A	901	910	anti-parallel
Strand 9	A	888	898	anti-parallel
Strand 10	A	823	828	anti-parallel
Strand 11	A	817	820	anti-parallel
Strand 12	A	789	791	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	680	682	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	430	431	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	490	first strand
Strand 2	B	530	535	anti-parallel
Strand 3	B	561	566	anti-parallel
Strand 4	B	571	573	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	662	first strand
Strand 2	B	722	733	anti-parallel
Strand 3	B	736	745	anti-parallel
Strand 4	B	751	760	anti-parallel
Strand 5	B	706	712	anti-parallel
Strand 6	B	872	880	anti-parallel
Strand 7	B	915	925	anti-parallel
Strand 8	B	901	910	anti-parallel
Strand 9	B	888	898	anti-parallel
Strand 10	B	823	828	anti-parallel
Strand 11	B	817	820	anti-parallel
Strand 12	B	789	791	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	675	first strand
Strand 2	B	680	682	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OII

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OII