Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OJ1 entry

There are 2 chains in PDB entry 8OJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 62SER 398
B
 T 1 A 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8OJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 71Right-handed alpha
Helix 2
AA2
A
86 96Right-handed alpha
Helix 3
AA3
A
171 176Right-handed alpha
Helix 4
AA4
A
184 191Right-handed alpha
Helix 5
AA5
A
234 242Right-handed alpha
Helix 6
AA6
A
279 298Right-handed alpha
Helix 7
AA7
A
306 310Right-handed 310
Helix 8
AA8
A
318 327Right-handed alpha
Helix 9
AA9
A
389 391Right-handed 310
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There are 4 sheets in PDB entry 8OJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
133 141anti-parallel
Strand 3
A
115 126anti-parallel
Strand 4
A
82 85anti-parallel
Strand 5
A
315 317anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
249 254anti-parallel
Strand 3
A
260 265anti-parallel
Strand 4
A
207 209parallel
Strand 5
A
215 217anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
228 231anti-parallel
Strand 3
A
220 223anti-parallel
Strand 4
A
203 204anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
350 356anti-parallel
Strand 4
A
334 337anti-parallel
Strand 5
A
393 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il