Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OJ4 entry

There are 7 chains in PDB entry 8OJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 24GLU 208
A
 THR 36TYR 152
B
 THR 36TYR 152
C
 ILE 34TYR 152
D
 SER 33TYR 152
E
 ARG 35TYR 152
F
 ARG 35TYR 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8OJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
26 44Right-handed alpha
Helix 2
AA2
H
46 52Right-handed alpha
Helix 3
AA3
H
55 63Right-handed alpha
Helix 4
AA4
H
64 68Right-handed 310
Helix 5
AA5
H
70 75Right-handed alpha
Helix 6
AA6
H
79 85Right-handed 310
Helix 7
AA7
H
86 109Right-handed alpha
Helix 8
AA8
H
174 181Right-handed alpha
Helix 9
AA9
H
182 188Right-handed alpha
Helix 10
AB1
H
189 197Right-handed alpha
Helix 11
AB2
A
142 150Right-handed alpha
Helix 12
AB3
B
142 151Right-handed alpha
Helix 13
AB4
C
142 150Right-handed alpha
Helix 14
AB5
D
144 150Right-handed alpha
Helix 15
AB6
E
144 150Right-handed alpha
Helix 16
AB7
F
144 150Right-handed alpha
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There are 9 sheets in PDB entry 8OJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 135first strand
Strand 2
H
148 153anti-parallel
Strand 3
H
162 163anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
66 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
110 115anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
63 73anti-parallel
Strand 4
B
57 60anti-parallel
Strand 5
B
110 116parallel
Strand 6
B
97 103anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 45first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
66 73anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
58 60anti-parallel
Strand 3
C
110 116parallel
Strand 4
C
97 103anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 103first strand
Strand 2
D
110 115anti-parallel
Strand 3
D
57 60parallel
Strand 4
D
63 72anti-parallel
Strand 5
D
81 87anti-parallel
Strand 6
D
39 45anti-parallel
Strand 7
D
132 133parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 45first strand
Strand 2
E
81 86anti-parallel
Strand 3
E
63 72anti-parallel
Strand 4
E
57 60anti-parallel
Strand 5
E
111 115parallel
Strand 6
E
98 102anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 45first strand
Strand 2
F
81 87anti-parallel
Strand 3
F
63 72anti-parallel
Strand 4
F
57 60anti-parallel
Strand 5
F
110 116parallel
Strand 6
F
97 103anti-parallel
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