Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OJ7 entry

There are 4 chains in PDB entry 8OJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	ALA 1235
B	GLY 28	LYS 319
C	C 25	A 52
D	C 6	G 43

There are 54 helices in PDB entry 8OJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	83	Right-handed 310
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	159	163	Right-handed 310
Helix 4	AA4	A	168	175	Right-handed alpha
Helix 5	AA5	A	209	217	Right-handed alpha
Helix 6	AA6	A	220	234	Right-handed alpha
Helix 7	AA7	A	244	246	Right-handed 310
Helix 8	AA8	A	275	286	Right-handed alpha
Helix 9	AA9	A	298	307	Right-handed alpha
Helix 10	AB1	A	331	335	Right-handed 310
Helix 11	AB2	A	346	348	Right-handed 310
Helix 12	AB3	A	420	430	Right-handed alpha
Helix 13	AB4	A	442	458	Right-handed alpha
Helix 14	AB5	A	470	482	Right-handed alpha
Helix 15	AB6	A	525	533	Right-handed alpha
Helix 16	AB7	A	539	548	Right-handed alpha
Helix 17	AB8	A	559	565	Right-handed alpha
Helix 18	AB9	A	567	593	Right-handed alpha
Helix 19	AC1	A	593	606	Right-handed alpha
Helix 20	AC2	A	608	615	Right-handed alpha
Helix 21	AC3	A	617	632	Right-handed alpha
Helix 22	AC4	A	720	729	Right-handed alpha
Helix 23	AC5	A	732	734	Right-handed 310
Helix 24	AC6	A	740	744	Right-handed 310
Helix 25	AC7	A	772	790	Right-handed alpha
Helix 26	AC8	A	798	822	Right-handed alpha
Helix 27	AC9	A	830	856	Right-handed alpha
Helix 28	AD1	A	858	866	Right-handed alpha
Helix 29	AD2	A	867	873	Right-handed 310
Helix 30	AD3	A	898	918	Right-handed alpha
Helix 31	AD4	A	955	959	Right-handed 310
Helix 32	AD5	A	963	980	Right-handed alpha
Helix 33	AD6	A	980	990	Right-handed alpha
Helix 34	AD7	A	991	993	Right-handed 310
Helix 35	AD8	A	994	1001	Right-handed 310
Helix 36	AD9	A	1004	1006	Right-handed 310
Helix 37	AE1	A	1007	1021	Right-handed alpha
Helix 38	AE2	A	1027	1032	Right-handed 310
Helix 39	AE3	A	1040	1044	Right-handed 310
Helix 40	AE4	A	1049	1061	Right-handed alpha
Helix 41	AE5	A	1080	1092	Right-handed alpha
Helix 42	AE6	A	1138	1141	Right-handed 310
Helix 43	AE7	A	1145	1152	Right-handed alpha
Helix 44	AE8	A	1157	1174	Right-handed alpha
Helix 45	AE9	A	1175	1178	Right-handed 310
Helix 46	AF1	A	1180	1190	Right-handed alpha
Helix 47	AF2	A	1199	1207	Right-handed alpha
Helix 48	AF3	A	1219	1235	Right-handed alpha
Helix 49	AF4	B	37	48	Right-handed alpha
Helix 50	AF5	B	84	86	Right-handed 310
Helix 51	AF6	B	109	113	Right-handed 310
Helix 52	AF7	B	153	156	Right-handed 310
Helix 53	AF8	B	181	191	Right-handed alpha
Helix 54	AF9	B	273	281	Right-handed alpha

There are 17 sheets in PDB entry 8OJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	94	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	133	134	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	341	345	anti-parallel
Strand 3	A	193	198	parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	314	318	anti-parallel
Strand 7	A	350	352	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	266	273	anti-parallel
Strand 4	A	248	257	anti-parallel
Strand 5	A	634	635	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	406	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	889	893	anti-parallel
Strand 5	A	881	884	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	760	765	anti-parallel
Strand 3	A	752	757	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	1143	1144	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1196	first strand
Strand 2	B	164	167	parallel
Strand 3	A	1214	1215	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	122	128	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	149	151	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	122	128	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	157	160	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	75	82	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	303	anti-parallel
Strand 7	B	286	291	anti-parallel
Strand 8	B	176	180	anti-parallel
Strand 9	B	255	259	anti-parallel
Strand 10	B	222	224	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	106	107	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJ7