Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OJC entry

There are 2 chains in PDB entry 8OJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 22 A 23
A
 THR 59GLY 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8OJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 83Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
420 430Right-handed alpha
Helix 4
AA4
A
442 458Right-handed alpha
Helix 5
AA5
A
470 482Right-handed alpha
Helix 6
AA6
A
525 531Right-handed alpha
Helix 7
AA7
A
539 548Right-handed alpha
Helix 8
AA8
A
559 565Right-handed alpha
Helix 9
AA9
A
567 593Right-handed alpha
Helix 10
AB1
A
593 606Right-handed alpha
Helix 11
AB2
A
608 615Right-handed alpha
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There are 5 sheets in PDB entry 8OJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
94 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
110 113anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
193 199parallel
Strand 3
A
181 187anti-parallel
Strand 4
A
147 155anti-parallel
Strand 5
A
314 318anti-parallel
Strand 6
A
350 352anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
406 414parallel
Strand 3
A
390 400anti-parallel
Strand 4
A
363 372anti-parallel
Strand 5
A
461 464parallel
Strand 6
A
521 524parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
514 517anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il