Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OJD entry

There are 3 chains in PDB entry 8OJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 61ARG 1094
C
 C 2 A 23
D
 G 0 G 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8OJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 83Right-handed 310
Helix 2
AA2
A
159 163Right-handed alpha
Helix 3
AA3
A
168 174Right-handed alpha
Helix 4
AA4
A
209 217Right-handed alpha
Helix 5
AA5
A
220 234Right-handed alpha
Helix 6
AA6
A
244 246Right-handed 310
Helix 7
AA7
A
275 286Right-handed alpha
Helix 8
AA8
A
298 307Right-handed alpha
Helix 9
AA9
A
331 335Right-handed 310
Helix 10
AB1
A
420 430Right-handed alpha
Helix 11
AB2
A
442 458Right-handed alpha
Helix 12
AB3
A
470 482Right-handed alpha
Helix 13
AB4
A
486 490Right-handed 310
Helix 14
AB5
A
525 531Right-handed alpha
Helix 15
AB6
A
539 548Right-handed alpha
Helix 16
AB7
A
559 565Right-handed alpha
Helix 17
AB8
A
567 593Right-handed alpha
Helix 18
AB9
A
593 606Right-handed alpha
Helix 19
AC1
A
608 615Right-handed alpha
Helix 20
AC2
A
617 632Right-handed alpha
Helix 21
AC3
A
720 729Right-handed alpha
Helix 22
AC4
A
739 743Right-handed 310
Helix 23
AC5
A
772 792Right-handed alpha
Helix 24
AC6
A
796 816Right-handed alpha
Helix 25
AC7
A
816 823Right-handed alpha
Helix 26
AC8
A
830 856Right-handed alpha
Helix 27
AC9
A
858 866Right-handed alpha
Helix 28
AD1
A
868 873Right-handed alpha
Helix 29
AD2
A
898 917Right-handed alpha
Helix 30
AD3
A
963 980Right-handed alpha
Helix 31
AD4
A
980 990Right-handed alpha
Helix 32
AD5
A
991 993Right-handed 310
Helix 33
AD6
A
994 995Right-handed 310
Helix 34
AD7
A
996 1001Right-handed alpha
Helix 35
AD8
A
1007 1022Right-handed alpha
Helix 36
AD9
A
1027 1032Right-handed 310
Helix 37
AE1
A
1051 1055Right-handed 310
Helix 38
AE2
A
1082 1094Right-handed alpha
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There are 11 sheets in PDB entry 8OJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
94 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
110 113anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
133 134anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
193 199parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
146 158anti-parallel
Strand 6
A
314 318anti-parallel
Strand 7
A
350 352anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
266 273anti-parallel
Strand 4
A
248 257anti-parallel
Strand 5
A
634 635parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
406 414parallel
Strand 3
A
390 400anti-parallel
Strand 4
A
363 372anti-parallel
Strand 5
A
461 464parallel
Strand 6
A
521 524parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
513 517anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
924 937anti-parallel
Strand 3
A
713 718anti-parallel
Strand 4
A
889 895anti-parallel
Strand 5
A
879 885anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
924 937anti-parallel
Strand 3
A
940 945anti-parallel
Strand 4
A
950 953anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 737first strand
Strand 2
A
760 765anti-parallel
Strand 3
A
752 757anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1036first strand
Strand 2
A
1071 1074anti-parallel
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