Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OJN entry

There are 6 chains in PDB entry 8OJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 648	ALA 781
E	ARG 648	ALA 781
D	ARG 648	ALA 781
F	ARG 648	ALA 781
B	ARG 648	ALA 781
A	ARG 648	ALA 781

There are no helices in PDB entry 8OJN

There are 6 sheets in PDB entry 8OJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	651	first strand
Strand 2	C	657	659	anti-parallel
Strand 3	C	668	672	parallel
Strand 4	B	677	681	parallel
Strand 5	A	684	691	parallel
Strand 6	C	697	704	parallel
Strand 7	C	707	714	anti-parallel
Strand 8	C	728	733	anti-parallel
Strand 9	C	739	746	anti-parallel
Strand 10	C	753	755	anti-parallel
Strand 11	C	764	766	parallel
Strand 12	B	770	772	parallel
Strand 13	A	779	780	parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	C	770	772	parallel
Strand 3	A	764	766	parallel
Strand 4	A	753	755	parallel
Strand 5	A	739	746	anti-parallel
Strand 6	A	728	733	anti-parallel
Strand 7	A	707	714	anti-parallel
Strand 8	A	698	704	anti-parallel
Strand 9	B	685	691	parallel
Strand 10	C	675	681	parallel
Strand 11	A	668	672	parallel
Strand 12	A	657	659	parallel
Strand 13	A	650	651	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	780	first strand
Strand 2	A	770	772	parallel
Strand 3	B	764	766	parallel
Strand 4	B	753	755	parallel
Strand 5	B	739	746	anti-parallel
Strand 6	B	728	733	anti-parallel
Strand 7	B	707	714	anti-parallel
Strand 8	B	698	704	anti-parallel
Strand 9	C	685	691	parallel
Strand 10	A	677	681	parallel
Strand 11	B	668	672	parallel
Strand 12	B	657	659	parallel
Strand 13	B	649	651	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	649	651	first strand
Strand 2	E	657	659	anti-parallel
Strand 3	E	668	672	parallel
Strand 4	D	677	681	parallel
Strand 5	F	684	691	parallel
Strand 6	E	697	703	parallel
Strand 7	E	708	714	anti-parallel
Strand 8	E	728	733	anti-parallel
Strand 9	E	739	746	anti-parallel
Strand 10	E	753	755	anti-parallel
Strand 11	E	764	766	parallel
Strand 12	D	770	772	parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	779	780	first strand
Strand 2	E	770	772	parallel
Strand 3	F	764	766	parallel
Strand 4	F	753	755	parallel
Strand 5	F	739	746	anti-parallel
Strand 6	F	728	733	anti-parallel
Strand 7	F	707	714	anti-parallel
Strand 8	F	698	704	anti-parallel
Strand 9	D	685	691	parallel
Strand 10	E	675	681	parallel
Strand 11	F	668	672	parallel
Strand 12	F	657	659	parallel
Strand 13	F	649	651	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	779	780	first strand
Strand 2	F	770	772	parallel
Strand 3	D	764	766	parallel
Strand 4	D	753	755	parallel
Strand 5	D	739	746	anti-parallel
Strand 6	D	728	733	anti-parallel
Strand 7	D	707	714	anti-parallel
Strand 8	D	698	704	anti-parallel
Strand 9	E	685	691	parallel
Strand 10	F	675	681	parallel
Strand 11	D	668	672	parallel
Strand 12	D	657	659	parallel
Strand 13	D	649	651	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OJN