Analysis of interatomic Contacts of Structural Units in PDB entry:
8OK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OK5 entry

There is 1 chain in PDB entry 8OK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24LEU 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8OK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 42Right-handed alpha
Helix 2
AA2
A
57 72Right-handed alpha
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
116 118Right-handed 310
Helix 8
AA8
A
119 130Right-handed alpha
Helix 9
AA9
A
136 159Right-handed alpha
Helix 10
AB1
A
160 169Right-handed alpha
Helix 11
AB2
A
172 186Right-handed alpha
Helix 12
AB3
A
199 204Right-handed 310
Helix 13
AB4
A
208 214Right-handed alpha
Helix 14
AB5
A
224 234Right-handed alpha
Helix 15
AB6
A
242 246Right-handed 310
Helix 16
AB7
A
266 275Right-handed alpha
Helix 17
AB8
A
286 299Right-handed alpha
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
344 382Right-handed alpha
Helix 20
AC2
A
383 389Right-handed alpha
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There are 2 sheets in PDB entry 8OK5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
283 284parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
325 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il