Analysis of interatomic Contacts of Structural Units in PDB entry:
8OK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OK6 entry

There are 2 chains in PDB entry 8OK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24SER 391
C
 ASN 24SER 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8OK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 42Right-handed alpha
Helix 2
AA2
A
57 72Right-handed alpha
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
116 118Right-handed 310
Helix 8
AA8
A
119 130Right-handed alpha
Helix 9
AA9
A
136 159Right-handed alpha
Helix 10
AB1
A
160 170Right-handed alpha
Helix 11
AB2
A
172 186Right-handed alpha
Helix 12
AB3
A
199 204Right-handed 310
Helix 13
AB4
A
208 214Right-handed alpha
Helix 14
AB5
A
224 234Right-handed alpha
Helix 15
AB6
A
242 246Right-handed 310
Helix 16
AB7
A
266 275Right-handed alpha
Helix 17
AB8
A
286 301Right-handed alpha
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
344 367Right-handed alpha
Helix 20
AC2
A
367 382Right-handed alpha
Helix 21
AC3
A
383 390Right-handed alpha
Helix 22
AC4
C
30 42Right-handed alpha
Helix 23
AC5
C
57 72Right-handed alpha
Helix 24
AC6
C
73 78Right-handed alpha
Helix 25
AC7
C
79 81Right-handed 310
Helix 26
AC8
C
102 118Right-handed alpha
Helix 27
AC9
C
119 130Right-handed alpha
Helix 28
AD1
C
136 159Right-handed alpha
Helix 29
AD2
C
160 170Right-handed alpha
Helix 30
AD3
C
172 186Right-handed alpha
Helix 31
AD4
C
199 204Right-handed 310
Helix 32
AD5
C
208 214Right-handed alpha
Helix 33
AD6
C
224 234Right-handed alpha
Helix 34
AD7
C
242 246Right-handed 310
Helix 35
AD8
C
266 275Right-handed alpha
Helix 36
AD9
C
286 301Right-handed alpha
Helix 37
AE1
C
339 344Right-handed alpha
Helix 38
AE2
C
344 382Right-handed alpha
Helix 39
AE3
C
383 390Right-handed alpha
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There are 4 sheets in PDB entry 8OK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
283 284parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
325 330anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
283 284parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 303first strand
Strand 2
C
308 313anti-parallel
Strand 3
C
325 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il