Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OKD entry

There are 4 chains in PDB entry 8OKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 52LEU 369
B
 LYS 52LEU 369
C
 G 1 A 75
X
 G 1 A 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8OKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
88 101Right-handed alpha
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
159 164Right-handed alpha
Helix 5
AA5
A
206 212Right-handed alpha
Helix 6
AA6
A
213 217Right-handed 310
Helix 7
AA7
A
259 262Right-handed 310
Helix 8
AA8
A
277 291Right-handed alpha
Helix 9
AA9
A
297 304Right-handed alpha
Helix 10
AB1
A
305 308Right-handed 310
Helix 11
AB2
A
337 369Right-handed alpha
Helix 12
AB3
B
56 60Right-handed 310
Helix 13
AB4
B
88 100Right-handed alpha
Helix 14
AB5
B
105 109Right-handed 310
Helix 15
AB6
B
159 166Right-handed alpha
Helix 16
AB7
B
185 190Right-handed alpha
Helix 17
AB8
B
205 214Right-handed alpha
Helix 18
AB9
B
215 217Right-handed 310
Helix 19
AC1
B
259 263Right-handed 310
Helix 20
AC2
B
277 291Right-handed alpha
Helix 21
AC3
B
297 304Right-handed alpha
Helix 22
AC4
B
337 369Right-handed alpha
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There are 7 sheets in PDB entry 8OKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
126 134anti-parallel
Strand 3
A
61 71anti-parallel
Strand 4
A
172 174anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
126 134anti-parallel
Strand 3
A
61 71anti-parallel
Strand 4
A
178 179anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
322 326parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
264 271anti-parallel
Strand 5
A
243 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
238 241anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 134first strand
Strand 2
B
61 71anti-parallel
Strand 3
B
172 179anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
322 326parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
265 271anti-parallel
Strand 5
B
241 248anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
238 239anti-parallel
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