Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OKH entry

There are 2 chains in PDB entry 8OKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLU 187
B
 GLY 24HIS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8OKH

There are 5 sheets in PDB entry 8OKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
65 77anti-parallel
Strand 4
A
151 164anti-parallel
Strand 5
A
102 112anti-parallel
Strand 6
A
118 126anti-parallel
Strand 7
B
119 126anti-parallel
Strand 8
B
102 112anti-parallel
Strand 9
B
151 163anti-parallel
Strand 10
B
65 77anti-parallel
Strand 11
B
25 29anti-parallel
Strand 12
B
39 41anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
175 183anti-parallel
Strand 4
A
82 97anti-parallel
Strand 5
A
131 137anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
168 172anti-parallel
Strand 3
A
82 97anti-parallel
Strand 4
A
142 145anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
175 183anti-parallel
Strand 3
B
82 97anti-parallel
Strand 4
B
131 137anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
168 172anti-parallel
Strand 3
B
82 97anti-parallel
Strand 4
B
142 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il