Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OKI entry

There are 16 chains in PDB entry 8OKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 901
B	ASP 8	ARG 1116
C	VAL 2	GLN 391
D	GLY 3	THR 260
G	LYS 4	GLU 84
H	PHE 7	GLU 81
I	GLU 3	VAL 60
K	LYS 3	PRO 56
L	MET 1	LYS 94
N	MET 1	TYR 65
P	VAL 2	ILE 49
X	G 1	C 26
Y	G 10	C 35
Z	G 11	G 19
E	MET 1	LYS 189
F	ILE 2	LYS 117

There are130 helices in PDB entry 8OKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	22	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	85	94	Right-handed alpha
Helix 4	AA4	A	106	119	Right-handed alpha
Helix 5	AA5	A	124	141	Right-handed alpha
Helix 6	AA6	A	179	189	Right-handed alpha
Helix 7	AA7	A	190	198	Right-handed 310
Helix 8	AA8	A	206	209	Right-handed 310
Helix 9	AA9	A	219	223	Right-handed 310
Helix 10	AB1	A	236	259	Right-handed alpha
Helix 11	AB2	A	261	281	Right-handed alpha
Helix 12	AB3	A	302	306	Right-handed 310
Helix 13	AB4	A	344	348	Right-handed alpha
Helix 14	AB5	A	360	370	Right-handed alpha
Helix 15	AB6	A	395	403	Right-handed alpha
Helix 16	AB7	A	428	430	Right-handed 310
Helix 17	AB8	A	448	450	Right-handed 310
Helix 18	AB9	A	451	456	Right-handed alpha
Helix 19	AC1	A	471	482	Right-handed alpha
Helix 20	AC2	A	483	487	Right-handed 310
Helix 21	AC3	A	502	513	Right-handed alpha
Helix 22	AC4	A	519	531	Right-handed alpha
Helix 23	AC5	A	545	547	Right-handed 310
Helix 24	AC6	A	553	558	Right-handed alpha
Helix 25	AC7	A	579	590	Right-handed alpha
Helix 26	AC8	A	594	601	Right-handed alpha
Helix 27	AC9	A	620	625	Right-handed alpha
Helix 28	AD1	A	630	639	Right-handed alpha
Helix 29	AD2	A	640	663	Right-handed alpha
Helix 30	AD3	A	667	672	Right-handed 310
Helix 31	AD4	A	674	701	Right-handed alpha
Helix 32	AD5	A	711	738	Right-handed alpha
Helix 33	AD6	A	743	751	Right-handed alpha
Helix 34	AD7	A	756	765	Right-handed alpha
Helix 35	AD8	A	811	847	Right-handed alpha
Helix 36	AD9	A	876	880	Right-handed 310
Helix 37	AE1	A	887	900	Right-handed alpha
Helix 38	AE2	B	10	25	Right-handed alpha
Helix 39	AE3	B	28	51	Right-handed alpha
Helix 40	AE4	B	85	92	Right-handed alpha
Helix 41	AE5	B	138	145	Right-handed alpha
Helix 42	AE6	B	224	232	Right-handed alpha
Helix 43	AE7	B	236	245	Right-handed alpha
Helix 44	AE8	B	247	259	Right-handed alpha
Helix 45	AE9	B	266	279	Right-handed alpha
Helix 46	AF1	B	283	299	Right-handed alpha
Helix 47	AF2	B	300	304	Right-handed 310
Helix 48	AF3	B	306	308	Right-handed 310
Helix 49	AF4	B	309	329	Right-handed alpha
Helix 50	AF5	B	339	341	Right-handed 310
Helix 51	AF6	B	347	379	Right-handed alpha
Helix 52	AF7	B	379	386	Right-handed alpha
Helix 53	AF8	B	386	393	Right-handed alpha
Helix 54	AF9	B	398	411	Right-handed alpha
Helix 55	AG1	B	428	436	Right-handed alpha
Helix 56	AG2	B	449	454	Right-handed alpha
Helix 57	AG3	B	456	460	Right-handed 310
Helix 58	AG4	B	491	500	Right-handed alpha
Helix 59	AG5	B	531	546	Right-handed alpha
Helix 60	AG6	B	587	597	Right-handed alpha
Helix 61	AG7	B	600	607	Right-handed alpha
Helix 62	AG8	B	616	620	Right-handed 310
Helix 63	AG9	B	626	630	Right-handed 310
Helix 64	AH1	B	640	645	Right-handed 310
Helix 65	AH2	B	647	651	Right-handed 310
Helix 66	AH3	B	654	658	Right-handed 310
Helix 67	AH4	B	659	670	Right-handed alpha
Helix 68	AH5	B	702	708	Right-handed alpha
Helix 69	AH6	B	709	713	Right-handed 310
Helix 70	AH7	B	739	744	Right-handed alpha
Helix 71	AH8	B	891	895	Right-handed 310
Helix 72	AH9	B	911	917	Right-handed alpha
Helix 73	AI1	B	918	935	Right-handed alpha
Helix 74	AI2	B	941	945	Right-handed 310
Helix 75	AI3	B	947	959	Right-handed alpha
Helix 76	AI4	B	994	998	Right-handed 310
Helix 77	AI5	B	1027	1038	Right-handed alpha
Helix 78	AI6	B	1039	1048	Right-handed alpha
Helix 79	AI7	B	1092	1105	Right-handed alpha
Helix 80	AI8	C	3	15	Right-handed alpha
Helix 81	AI9	C	19	35	Right-handed alpha
Helix 82	AJ1	C	40	58	Right-handed alpha
Helix 83	AJ2	C	65	76	Right-handed alpha
Helix 84	AJ3	C	77	81	Right-handed 310
Helix 85	AJ4	C	99	109	Right-handed alpha
Helix 86	AJ5	C	130	141	Right-handed alpha
Helix 87	AJ6	C	144	148	Right-handed alpha
Helix 88	AJ7	C	166	171	Right-handed alpha
Helix 89	AJ8	C	176	187	Right-handed alpha
Helix 90	AJ9	C	216	222	Right-handed alpha
Helix 91	AK1	C	251	256	Right-handed alpha
Helix 92	AK2	C	270	279	Right-handed alpha
Helix 93	AK3	C	279	298	Right-handed alpha
Helix 94	AK4	C	303	315	Right-handed alpha
Helix 95	AK5	C	328	332	Right-handed 310
Helix 96	AK6	C	334	340	Right-handed alpha
Helix 97	AK7	C	343	355	Right-handed alpha
Helix 98	AK8	C	363	370	Right-handed alpha
Helix 99	AK9	C	376	380	Right-handed 310
Helix 100	AL1	D	24	38	Right-handed alpha
Helix 101	AL2	D	57	67	Right-handed alpha
Helix 102	AL3	D	104	106	Right-handed 310
Helix 103	AL4	D	145	149	Right-handed 310
Helix 104	AL5	D	169	181	Right-handed alpha
Helix 105	AL6	D	233	260	Right-handed alpha
Helix 106	AL7	G	14	26	Right-handed alpha
Helix 107	AL8	G	52	61	Right-handed alpha
Helix 108	AL9	G	75	78	Right-handed 310
Helix 109	AM1	G	79	84	Right-handed alpha
Helix 110	AM2	H	8	12	Right-handed 310
Helix 111	AM3	H	22	33	Right-handed alpha
Helix 112	AM4	H	47	54	Right-handed alpha
Helix 113	AM5	I	42	49	Right-handed alpha
Helix 114	AM6	K	5	21	Right-handed alpha
Helix 115	AM7	K	35	47	Right-handed alpha
Helix 116	AM8	L	21	33	Right-handed alpha
Helix 117	AM9	L	66	93	Right-handed alpha
Helix 118	AN1	N	17	27	Right-handed alpha
Helix 119	AN2	N	30	39	Right-handed alpha
Helix 120	AN3	N	42	51	Right-handed alpha
Helix 121	AN4	E	14	19	Right-handed 310
Helix 122	AN5	E	21	36	Right-handed alpha
Helix 123	AN6	E	111	113	Right-handed 310
Helix 124	AN7	E	173	189	Right-handed alpha
Helix 125	AN8	F	13	32	Right-handed alpha
Helix 126	AN9	F	40	51	Right-handed alpha
Helix 127	AO1	F	55	70	Right-handed alpha
Helix 128	AO2	F	74	85	Right-handed alpha
Helix 129	AO3	F	88	98	Right-handed alpha
Helix 130	AO4	F	104	116	Right-handed alpha

There are 43 sheets in PDB entry 8OKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1054	1059	first strand
Strand 2	B	1086	1091	anti-parallel
Strand 3	A	2	9	parallel
Strand 4	B	1110	1114	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1054	1059	first strand
Strand 2	B	1086	1091	anti-parallel
Strand 3	A	2	9	parallel
Strand 4	C	357	358	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	81	first strand
Strand 2	A	211	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	173	177	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	233	234	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	B	1025	1026	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1000	1002	first strand
Strand 2	A	324	331	anti-parallel
Strand 3	A	463	467	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	432	440	anti-parallel
Strand 6	A	339	343	parallel
Strand 7	A	445	447	anti-parallel
Strand 8	A	324	331	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	408	411	anti-parallel
Strand 3	A	378	382	anti-parallel
Strand 4	A	388	390	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	495	496	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	549	552	anti-parallel
Strand 3	A	542	543	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	570	first strand
Strand 2	A	606	610	anti-parallel
Strand 3	A	613	616	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	859	first strand
Strand 2	A	865	867	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	69	anti-parallel
Strand 3	B	97	108	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	69	anti-parallel
Strand 3	B	97	108	anti-parallel
Strand 4	B	116	124	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	81	83	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	421	423	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	167	171	anti-parallel
Strand 3	B	438	440	parallel
Strand 4	B	477	479	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	189	195	anti-parallel
Strand 3	B	198	205	anti-parallel
Strand 4	B	213	215	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	610	613	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	636	637	anti-parallel
Strand 4	B	623	624	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	517	521	anti-parallel
Strand 4	B	562	566	parallel
Strand 5	B	553	557	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	749	758	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	B	800	801	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	749	758	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	P	35	36	anti-parallel
Strand 6	P	4	8	anti-parallel
Strand 7	P	14	17	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	701	first strand
Strand 2	B	938	939	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	965	966	first strand
Strand 2	B	981	990	anti-parallel
Strand 3	B	875	877	anti-parallel
Strand 4	B	883	890	anti-parallel
Strand 5	B	734	738	parallel
Strand 6	B	906	908	anti-parallel
Strand 7	B	717	723	parallel
Strand 8	B	981	990	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	806	808	first strand
Strand 2	B	835	836	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	812	first strand
Strand 2	B	831	832	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	898	first strand
Strand 2	B	968	969	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1067	1069	first strand
Strand 2	B	1074	1076	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	239	first strand
Strand 2	C	242	248	anti-parallel
Strand 3	C	117	122	anti-parallel
Strand 4	C	261	268	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	155	first strand
Strand 2	C	160	165	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	195	196	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	53	first strand
Strand 2	C	382	384	anti-parallel
Strand 3	E	57	59	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	12	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	213	228	anti-parallel
Strand 4	D	151	163	anti-parallel
Strand 5	D	190	194	anti-parallel
Strand 6	D	184	187	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	89	96	anti-parallel
Strand 3	D	130	140	anti-parallel
Strand 4	D	41	52	anti-parallel
Strand 5	P	44	47	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	102	first strand
Strand 2	D	121	125	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	5	10	anti-parallel
Strand 3	G	45	49	anti-parallel
Strand 4	G	35	37	anti-parallel
Strand 5	I	34	36	anti-parallel
Strand 6	I	54	56	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	60	65	anti-parallel
Strand 3	H	73	80	anti-parallel
Strand 4	H	42	44	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	12	13	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	9	first strand
Strand 2	L	12	18	anti-parallel
Strand 3	L	56	61	anti-parallel
Strand 4	L	38	44	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	54	first strand
Strand 2	E	66	77	anti-parallel
Strand 3	E	2	13	anti-parallel
Strand 4	F	9	11	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	109	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	84	93	anti-parallel
Strand 4	E	141	151	anti-parallel
Strand 5	E	159	164	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	109	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	84	93	anti-parallel
Strand 4	E	141	151	anti-parallel
Strand 5	E	171	172	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	126	129	anti-parallel
Strand 3	E	135	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKI