Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OKS entry

There are 3 chains in PDB entry 8OKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 517ARG 627
C
 SER 517ARG 627
A
 PRO 519ARG 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 8OKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
544 555Right-handed alpha
Helix 2
AA2
B
561 571Right-handed alpha
Helix 3
AA3
C
544 555Right-handed alpha
Helix 4
AA4
C
561 572Right-handed alpha
Helix 5
AA5
A
544 555Right-handed alpha
Helix 6
AA6
A
561 571Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8OKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
533 537anti-parallel
Strand 3
B
621 624anti-parallel
Strand 4
B
558 559anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
600 607first strand
Strand 2
B
590 597anti-parallel
Strand 3
B
578 585anti-parallel
Strand 4
B
616 619parallel
Strand 5
B
612 613anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
525 527first strand
Strand 2
C
533 537anti-parallel
Strand 3
C
621 625anti-parallel
Strand 4
C
558 559anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
600 607first strand
Strand 2
C
590 597anti-parallel
Strand 3
C
578 585anti-parallel
Strand 4
C
616 619parallel
Strand 5
C
612 613anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
533 537anti-parallel
Strand 3
A
621 624anti-parallel
Strand 4
A
558 559anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 607first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
578 585anti-parallel
Strand 4
A
616 619parallel
Strand 5
A
612 613anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il