Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OKU entry

There are 2 chains in PDB entry 8OKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 47LEU 392
B
 GLY 58LYS 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8OKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 102Right-handed 310
Helix 2
AA2
A
103 120Right-handed alpha
Helix 3
AA3
A
150 158Right-handed alpha
Helix 4
AA4
A
161 182Right-handed alpha
Helix 5
AA5
A
190 192Right-handed 310
Helix 6
AA6
A
225 229Right-handed 310
Helix 7
AA7
A
230 236Right-handed alpha
Helix 8
AA8
A
240 259Right-handed alpha
Helix 9
AA9
A
267 278Right-handed alpha
Helix 10
AB1
A
287 298Right-handed alpha
Helix 11
AB2
A
307 314Right-handed alpha
Helix 12
AB3
A
314 319Right-handed alpha
Helix 13
AB4
A
323 333Right-handed alpha
Helix 14
AB5
A
346 356Right-handed alpha
Helix 15
AB6
A
359 370Right-handed alpha
Helix 16
AB7
A
373 388Right-handed alpha
Helix 17
AB8
B
100 102Right-handed 310
Helix 18
AB9
B
103 120Right-handed alpha
Helix 19
AC1
B
150 158Right-handed alpha
Helix 20
AC2
B
161 182Right-handed alpha
Helix 21
AC3
B
190 192Right-handed 310
Helix 22
AC4
B
206 210Right-handed 310
Helix 23
AC5
B
230 236Right-handed alpha
Helix 24
AC6
B
240 259Right-handed alpha
Helix 25
AC7
B
267 278Right-handed alpha
Helix 26
AC8
B
287 298Right-handed alpha
Helix 27
AC9
B
301 305Right-handed 310
Helix 28
AD1
B
307 313Right-handed alpha
Helix 29
AD2
B
314 319Right-handed alpha
Helix 30
AD3
B
323 333Right-handed alpha
Helix 31
AD4
B
346 356Right-handed alpha
Helix 32
AD5
B
359 370Right-handed alpha
Helix 33
AD6
B
373 389Right-handed alpha
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There are 6 sheets in PDB entry 8OKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
66 74anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
91 98anti-parallel
Strand 5
A
137 143anti-parallel
Strand 6
A
128 133anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
194 196anti-parallel
Strand 3
A
202 204anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
211 212anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 74first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
137 143anti-parallel
Strand 5
B
128 133anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
194 196anti-parallel
Strand 3
B
202 204anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
211 212anti-parallel
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