Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OKV entry

There are 2 chains in PDB entry 8OKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	HIS 26	LYS 355
A	THR 35	ILE 348

There are 4 helices in PDB entry 8OKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	67	74	Right-handed alpha
Helix 2	AA2	A	67	74	Right-handed alpha
Helix 3	AA3	C	67	74	Right-handed alpha
Helix 4	AA4	D	67	74	Right-handed alpha

There are 28 sheets in PDB entry 8OKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	53	57	anti-parallel
Strand 3	B	39	43	anti-parallel
Strand 4	B	349	354	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	87	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	100	105	anti-parallel
Strand 4	B	111	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	128	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	152	157	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	188	193	anti-parallel
Strand 4	B	198	204	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	250	255	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	267	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	281	285	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	309	first strand
Strand 2	B	316	320	anti-parallel
Strand 3	B	329	333	anti-parallel
Strand 4	B	339	344	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	39	43	anti-parallel
Strand 4	A	349	354	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	87	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	100	105	anti-parallel
Strand 4	A	111	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	128	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	141	145	anti-parallel
Strand 4	A	152	157	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	188	193	anti-parallel
Strand 4	A	198	204	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	250	255	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	267	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	281	285	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	309	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	329	333	anti-parallel
Strand 4	A	339	344	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	53	57	anti-parallel
Strand 3	C	39	43	anti-parallel
Strand 4	C	349	354	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	87	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	100	105	anti-parallel
Strand 4	C	111	116	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	128	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	141	145	anti-parallel
Strand 4	C	152	157	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	177	182	anti-parallel
Strand 3	C	188	193	anti-parallel
Strand 4	C	198	204	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	219	223	anti-parallel
Strand 3	C	239	244	anti-parallel
Strand 4	C	250	255	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	267	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	281	285	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	309	first strand
Strand 2	C	316	320	anti-parallel
Strand 3	C	329	333	anti-parallel
Strand 4	C	339	344	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	53	57	anti-parallel
Strand 3	D	39	43	anti-parallel
Strand 4	D	349	354	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	87	first strand
Strand 2	D	90	95	anti-parallel
Strand 3	D	100	105	anti-parallel
Strand 4	D	111	116	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	128	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	152	157	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	174	first strand
Strand 2	D	177	182	anti-parallel
Strand 3	D	188	193	anti-parallel
Strand 4	D	199	204	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	250	255	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	267	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	281	285	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	309	first strand
Strand 2	D	316	320	anti-parallel
Strand 3	D	329	333	anti-parallel
Strand 4	D	339	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKV