Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OKW entry

There are 3 chains in PDB entry 8OKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 693	LEU 843
A	THR 693	LEU 843
B	SER 692	LEU 843

There are no helices in PDB entry 8OKW

There are 12 sheets in PDB entry 8OKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	710	first strand
Strand 2	C	824	827	anti-parallel
Strand 3	C	752	765	anti-parallel
Strand 4	C	835	842	anti-parallel
Strand 5	C	694	701	anti-parallel
Strand 6	C	728	731	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	710	first strand
Strand 2	C	824	827	anti-parallel
Strand 3	C	752	765	anti-parallel
Strand 4	C	793	802	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	806	817	anti-parallel
Strand 3	C	743	749	anti-parallel
Strand 4	C	733	734	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	806	817	anti-parallel
Strand 3	C	771	777	anti-parallel
Strand 4	C	782	789	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	710	first strand
Strand 2	A	824	827	anti-parallel
Strand 3	A	752	765	anti-parallel
Strand 4	A	835	842	anti-parallel
Strand 5	A	694	701	anti-parallel
Strand 6	A	728	731	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	710	first strand
Strand 2	A	824	827	anti-parallel
Strand 3	A	752	765	anti-parallel
Strand 4	A	793	802	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	A	806	817	anti-parallel
Strand 3	A	743	749	anti-parallel
Strand 4	A	733	734	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	A	806	817	anti-parallel
Strand 3	A	771	777	anti-parallel
Strand 4	A	782	789	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	710	first strand
Strand 2	B	824	827	anti-parallel
Strand 3	B	752	765	anti-parallel
Strand 4	B	835	842	anti-parallel
Strand 5	B	694	701	anti-parallel
Strand 6	B	728	731	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	710	first strand
Strand 2	B	824	827	anti-parallel
Strand 3	B	752	765	anti-parallel
Strand 4	B	793	802	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	717	first strand
Strand 2	B	806	817	anti-parallel
Strand 3	B	743	749	anti-parallel
Strand 4	B	733	734	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	717	first strand
Strand 2	B	806	817	anti-parallel
Strand 3	B	771	777	anti-parallel
Strand 4	B	782	789	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKW