Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OKX entry

There are 4 chains in PDB entry 8OKX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 161	PHE 522
B	ASP 100	SER 320
C	MET 1	CYS 112
D	MET 1	LYS 104

There are 21 helices in PDB entry 8OKX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	174	Right-handed alpha
Helix 2	AA2	A	177	200	Right-handed alpha
Helix 3	AA3	A	272	289	Right-handed alpha
Helix 4	AA4	A	331	335	Right-handed 310
Helix 5	AA5	A	340	353	Right-handed alpha
Helix 6	AA6	A	379	389	Right-handed alpha
Helix 7	AA7	A	407	424	Right-handed alpha
Helix 8	AA8	A	434	449	Right-handed alpha
Helix 9	AA9	A	451	456	Right-handed 310
Helix 10	AB1	A	460	478	Right-handed alpha
Helix 11	AB2	A	497	514	Right-handed alpha
Helix 12	AB3	A	516	522	Right-handed 310
Helix 13	AB4	B	175	179	Right-handed 310
Helix 14	AB5	B	276	289	Right-handed alpha
Helix 15	AB6	B	302	319	Right-handed alpha
Helix 16	AB7	C	33	39	Right-handed alpha
Helix 17	AB8	C	39	47	Right-handed alpha
Helix 18	AB9	C	66	83	Right-handed alpha
Helix 19	AC1	C	103	111	Right-handed alpha
Helix 20	AC2	D	23	36	Right-handed alpha
Helix 21	AC3	D	100	104	Right-handed 310

There are 9 sheets in PDB entry 8OKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	225	233	anti-parallel
Strand 3	A	316	326	parallel
Strand 4	A	357	361	anti-parallel
Strand 5	A	375	378	anti-parallel
Strand 6	A	248	252	anti-parallel
Strand 7	A	238	241	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	225	233	anti-parallel
Strand 3	A	316	326	parallel
Strand 4	A	308	312	anti-parallel
Strand 5	A	296	299	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	270	271	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	370	371	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	112	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	253	258	anti-parallel
Strand 4	B	165	169	anti-parallel
Strand 5	B	193	196	anti-parallel
Strand 6	B	200	203	anti-parallel
Strand 7	B	206	209	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	124	127	anti-parallel
Strand 3	B	263	273	anti-parallel
Strand 4	B	148	155	anti-parallel
Strand 5	B	219	225	anti-parallel
Strand 6	B	230	235	anti-parallel
Strand 7	B	238	244	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	59	61	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	5	9	anti-parallel
Strand 3	D	71	79	parallel
Strand 4	D	42	46	anti-parallel
Strand 5	D	49	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	5	9	anti-parallel
Strand 3	D	71	79	parallel
Strand 4	D	67	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OKX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OKX