Analysis of interatomic Contacts of Structural Units in PDB entry:
8OL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OL1 entry

There are 14 chains in PDB entry 8OL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ARG 23	GLY 102
C	ALA 10	PRO 117
D	LYS 30	SER 124
E	LYS 37	ARG 134
F	LEU 22	GLY 102
G	ALA 10	LEU 116
H	ARG 31	SER 124
I	T 1	G 145
J	C 1	A 145
K	GLY 161	PHE 522
L	ASP 100	SER 320
M	MET 1	CYS 112
N	MET 1	LYS 104

There are 63 helices in PDB entry 8OL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	50	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	54	Right-handed alpha
Helix 12	AB3	C	54	65	Right-handed alpha
Helix 13	AB4	C	66	69	Right-handed 310
Helix 14	AB5	C	79	89	Right-handed alpha
Helix 15	AB6	C	92	97	Right-handed alpha
Helix 16	AB7	D	37	46	Right-handed alpha
Helix 17	AB8	D	56	58	Right-handed 310
Helix 18	AB9	D	59	84	Right-handed alpha
Helix 19	AC1	D	95	102	Right-handed alpha
Helix 20	AC2	D	105	116	Right-handed alpha
Helix 21	AC3	D	119	124	Right-handed 310
Helix 22	AC4	E	45	57	Right-handed alpha
Helix 23	AC5	E	63	76	Right-handed alpha
Helix 24	AC6	E	85	114	Right-handed alpha
Helix 25	AC7	E	120	131	Right-handed alpha
Helix 26	AC8	F	24	29	Right-handed 310
Helix 27	AC9	F	30	42	Right-handed alpha
Helix 28	AD1	F	50	77	Right-handed alpha
Helix 29	AD2	F	82	93	Right-handed alpha
Helix 30	AD3	G	16	22	Right-handed alpha
Helix 31	AD4	G	26	37	Right-handed alpha
Helix 32	AD5	G	46	73	Right-handed alpha
Helix 33	AD6	G	79	88	Right-handed alpha
Helix 34	AD7	G	92	97	Right-handed alpha
Helix 35	AD8	G	112	116	Right-handed 310
Helix 36	AD9	H	37	46	Right-handed alpha
Helix 37	AE1	H	55	84	Right-handed alpha
Helix 38	AE2	H	90	102	Right-handed alpha
Helix 39	AE3	H	103	123	Right-handed alpha
Helix 40	AE4	K	162	174	Right-handed alpha
Helix 41	AE5	K	175	198	Right-handed alpha
Helix 42	AE6	K	199	204	Right-handed 310
Helix 43	AE7	K	262	264	Right-handed 310
Helix 44	AE8	K	272	289	Right-handed alpha
Helix 45	AE9	K	331	335	Right-handed 310
Helix 46	AF1	K	340	345	Right-handed alpha
Helix 47	AF2	K	345	354	Right-handed alpha
Helix 48	AF3	K	379	389	Right-handed alpha
Helix 49	AF4	K	405	425	Right-handed alpha
Helix 50	AF5	K	434	449	Right-handed alpha
Helix 51	AF6	K	451	456	Right-handed 310
Helix 52	AF7	K	460	477	Right-handed alpha
Helix 53	AF8	K	497	514	Right-handed alpha
Helix 54	AF9	K	516	522	Right-handed 310
Helix 55	AG1	L	276	289	Right-handed alpha
Helix 56	AG2	L	302	313	Right-handed alpha
Helix 57	AG3	M	33	39	Right-handed alpha
Helix 58	AG4	M	39	47	Right-handed alpha
Helix 59	AG5	M	66	84	Right-handed alpha
Helix 60	AG6	M	96	101	Right-handed alpha
Helix 61	AG7	M	104	111	Right-handed alpha
Helix 62	AG8	N	23	36	Right-handed alpha
Helix 63	AG9	N	100	104	Right-handed 310

There are 17 sheets in PDB entry 8OL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	317	326	parallel
Strand 4	K	357	361	anti-parallel
Strand 5	K	375	378	anti-parallel
Strand 6	K	248	253	anti-parallel
Strand 7	K	237	241	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	208	first strand
Strand 2	K	225	233	anti-parallel
Strand 3	K	317	326	parallel
Strand 4	K	308	312	anti-parallel
Strand 5	K	296	299	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	266	267	first strand
Strand 2	K	270	271	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	107	112	first strand
Strand 2	L	136	140	anti-parallel
Strand 3	L	253	258	anti-parallel
Strand 4	L	165	169	anti-parallel
Strand 5	L	192	196	anti-parallel
Strand 6	L	200	203	anti-parallel
Strand 7	L	206	209	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	119	first strand
Strand 2	L	124	127	anti-parallel
Strand 3	L	263	273	anti-parallel
Strand 4	L	148	155	anti-parallel
Strand 5	L	219	225	anti-parallel
Strand 6	L	230	235	anti-parallel
Strand 7	L	238	244	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	31	32	first strand
Strand 2	M	18	23	anti-parallel
Strand 3	M	59	62	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	19	first strand
Strand 2	N	2	9	anti-parallel
Strand 3	N	74	79	parallel
Strand 4	N	42	46	anti-parallel
Strand 5	N	49	50	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	67	68	first strand
Strand 2	N	71	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OL1