Analysis of interatomic Contacts of Structural Units in PDB entry:
8OLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OLD entry

There are 2 chains in PDB entry 8OLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 20VAL 242
C
 ILE 20GLU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8OLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
64 66Right-handed 310
Helix 2
AA2
B
77 94Right-handed alpha
Helix 3
AA3
B
163 172Right-handed alpha
Helix 4
AA4
B
172 187Right-handed alpha
Helix 5
AA5
B
199 216Right-handed alpha
Helix 6
AA6
C
64 66Right-handed 310
Helix 7
AA7
C
77 94Right-handed alpha
Helix 8
AA8
C
163 172Right-handed alpha
Helix 9
AA9
C
172 187Right-handed alpha
Helix 10
AB1
C
199 216Right-handed alpha
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There are 6 sheets in PDB entry 8OLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
240 241anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
125 138anti-parallel
Strand 4
B
142 155anti-parallel
Strand 5
B
25 30anti-parallel
Strand 6
B
232 235anti-parallel
Strand 7
B
222 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
34 41anti-parallel
Strand 4
B
71 74anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
239 242anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 105first strand
Strand 2
C
109 114anti-parallel
Strand 3
C
125 138anti-parallel
Strand 4
C
142 155anti-parallel
Strand 5
C
25 30anti-parallel
Strand 6
C
232 235anti-parallel
Strand 7
C
222 225anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 55first strand
Strand 2
C
58 62anti-parallel
Strand 3
C
34 41anti-parallel
Strand 4
C
71 74anti-parallel
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