Analysis of interatomic Contacts of Structural Units in PDB entry:
8OM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OM5 entry

There are 2 chains in PDB entry 8OM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 16ASN 919
B
 TYR 229PHE 1126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8OM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
81 94Right-handed alpha
Helix 4
AA4
A
184 195Right-handed alpha
Helix 5
AA5
A
208 220Right-handed alpha
Helix 6
AA6
A
228 233Right-handed alpha
Helix 7
AA7
A
236 242Right-handed alpha
Helix 8
AA8
A
258 262Right-handed 310
Helix 9
AA9
A
263 278Right-handed alpha
Helix 10
AB1
A
282 286Right-handed 310
Helix 11
AB2
A
303 310Right-handed alpha
Helix 12
AB3
A
325 331Right-handed alpha
Helix 13
AB4
A
335 348Right-handed alpha
Helix 14
AB5
A
352 369Right-handed alpha
Helix 15
AB6
A
370 379Right-handed alpha
Helix 16
AB7
A
380 384Right-handed 310
Helix 17
AB8
A
386 396Right-handed alpha
Helix 18
AB9
A
400 421Right-handed alpha
Helix 19
AC1
A
422 426Right-handed 310
Helix 20
AC2
A
429 457Right-handed alpha
Helix 21
AC3
A
475 504Right-handed alpha
Helix 22
AC4
A
528 533Right-handed 310
Helix 23
AC5
A
553 588Right-handed alpha
Helix 24
AC6
A
589 614Right-handed alpha
Helix 25
AC7
A
674 690Right-handed alpha
Helix 26
AC8
A
723 738Right-handed alpha
Helix 27
AC9
A
755 773Right-handed alpha
Helix 28
AD1
A
784 793Right-handed 310
Helix 29
AD2
A
827 832Right-handed alpha
Helix 30
AD3
A
839 852Right-handed alpha
Helix 31
AD4
A
876 891Right-handed alpha
Helix 32
AD5
A
909 919Right-handed alpha
Helix 33
AD6
B
232 243Right-handed alpha
Helix 34
AD7
B
259 271Right-handed alpha
Helix 35
AD8
B
289 300Right-handed alpha
Helix 36
AD9
B
411 421Right-handed alpha
Helix 37
AE1
B
433 446Right-handed alpha
Helix 38
AE2
B
459 463Right-handed 310
Helix 39
AE3
B
467 476Right-handed alpha
Helix 40
AE4
B
491 495Right-handed 310
Helix 41
AE5
B
496 511Right-handed alpha
Helix 42
AE6
B
512 514Right-handed 310
Helix 43
AE7
B
515 520Right-handed 310
Helix 44
AE8
B
521 525Right-handed 310
Helix 45
AE9
B
538 545Right-handed alpha
Helix 46
AF1
B
559 565Right-handed alpha
Helix 47
AF2
B
569 582Right-handed alpha
Helix 48
AF3
B
586 602Right-handed alpha
Helix 49
AF4
B
606 616Right-handed alpha
Helix 50
AF5
B
620 630Right-handed alpha
Helix 51
AF6
B
634 660Right-handed alpha
Helix 52
AF7
B
665 679Right-handed alpha
Helix 53
AF8
B
680 689Right-handed alpha
Helix 54
AF9
B
693 697Right-handed 310
Helix 55
AG1
B
709 737Right-handed alpha
Helix 56
AG2
B
782 817Right-handed alpha
Helix 57
AG3
B
817 843Right-handed alpha
Helix 58
AG4
B
864 871Right-handed alpha
Helix 59
AG5
B
901 919Right-handed alpha
Helix 60
AG6
B
951 964Right-handed alpha
Helix 61
AG7
B
982 1000Right-handed alpha
Helix 62
AG8
B
1011 1016Right-handed alpha
Helix 63
AG9
B
1017 1019Right-handed 310
Helix 64
AH1
B
1067 1076Right-handed alpha
Helix 65
AH2
B
1079 1113Right-handed alpha
Helix 66
AH3
B
1115 1125Right-handed alpha
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There are 13 sheets in PDB entry 8OM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
33 38anti-parallel
Strand 4
A
99 104parallel
Strand 5
A
118 123anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
198 201parallel
Strand 3
A
223 226parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
161 162anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
290 292parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 711parallel
Strand 3
A
744 748parallel
Strand 4
A
777 781parallel
Strand 5
A
664 668parallel
Strand 6
A
797 804parallel
Strand 7
A
813 819anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 516first strand
Strand 2
A
520 526anti-parallel
Strand 3
A
548 552anti-parallel
Strand 4
A
540 544anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
699 703parallel
Strand 3
A
633 635anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 308first strand
Strand 2
B
329 334anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
425 429parallel
Strand 3
B
454 458parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 390first strand
Strand 2
B
403 407anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
745 747first strand
Strand 2
B
750 757anti-parallel
Strand 3
B
777 781anti-parallel
Strand 4
B
769 774anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 885first strand
Strand 2
B
856 862anti-parallel
Strand 3
B
926 927anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
934 937first strand
Strand 2
B
970 975parallel
Strand 3
B
1004 1008parallel
Strand 4
B
891 895parallel
Strand 5
B
1025 1031parallel
Strand 6
B
1056 1061anti-parallel
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