Analysis of interatomic Contacts of Structural Units in PDB entry:
8OM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OM9 entry

There are 4 chains in PDB entry 8OM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144ILE 927
B
 TYR 229THR 1123
C
 A 25 G 53
D
 C 14 T 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8OM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 195Right-handed alpha
Helix 2
AA2
A
208 220Right-handed alpha
Helix 3
AA3
A
228 233Right-handed alpha
Helix 4
AA4
A
237 242Right-handed alpha
Helix 5
AA5
A
258 262Right-handed 310
Helix 6
AA6
A
263 278Right-handed alpha
Helix 7
AA7
A
282 286Right-handed 310
Helix 8
AA8
A
295 299Right-handed 310
Helix 9
AA9
A
303 310Right-handed alpha
Helix 10
AB1
A
325 331Right-handed alpha
Helix 11
AB2
A
335 348Right-handed alpha
Helix 12
AB3
A
352 369Right-handed alpha
Helix 13
AB4
A
369 379Right-handed alpha
Helix 14
AB5
A
386 396Right-handed alpha
Helix 15
AB6
A
400 413Right-handed alpha
Helix 16
AB7
A
413 424Right-handed alpha
Helix 17
AB8
A
430 435Right-handed 310
Helix 18
AB9
A
436 456Right-handed alpha
Helix 19
AC1
A
459 464Right-handed alpha
Helix 20
AC2
A
475 503Right-handed alpha
Helix 21
AC3
A
526 533Right-handed alpha
Helix 22
AC4
A
534 536Right-handed 310
Helix 23
AC5
A
553 615Right-handed alpha
Helix 24
AC6
A
639 644Right-handed alpha
Helix 25
AC7
A
674 690Right-handed alpha
Helix 26
AC8
A
723 739Right-handed alpha
Helix 27
AC9
A
755 773Right-handed alpha
Helix 28
AD1
A
785 788Right-handed 310
Helix 29
AD2
A
789 794Right-handed alpha
Helix 30
AD3
A
828 833Right-handed 310
Helix 31
AD4
A
837 852Right-handed alpha
Helix 32
AD5
A
877 894Right-handed alpha
Helix 33
AD6
A
900 919Right-handed alpha
Helix 34
AD7
A
920 927Right-handed alpha
Helix 35
AD8
B
230 243Right-handed alpha
Helix 36
AD9
B
260 271Right-handed alpha
Helix 37
AE1
B
290 300Right-handed alpha
Helix 38
AE2
B
411 422Right-handed alpha
Helix 39
AE3
B
433 442Right-handed alpha
Helix 40
AE4
B
468 475Right-handed alpha
Helix 41
AE5
B
496 512Right-handed alpha
Helix 42
AE6
B
516 520Right-handed 310
Helix 43
AE7
B
521 525Right-handed 310
Helix 44
AE8
B
538 546Right-handed alpha
Helix 45
AE9
B
559 565Right-handed alpha
Helix 46
AF1
B
569 582Right-handed alpha
Helix 47
AF2
B
586 603Right-handed alpha
Helix 48
AF3
B
608 615Right-handed alpha
Helix 49
AF4
B
620 630Right-handed alpha
Helix 50
AF5
B
634 663Right-handed alpha
Helix 51
AF6
B
667 680Right-handed alpha
Helix 52
AF7
B
681 688Right-handed alpha
Helix 53
AF8
B
691 696Right-handed alpha
Helix 54
AF9
B
709 737Right-handed alpha
Helix 55
AG1
B
757 762Right-handed alpha
Helix 56
AG2
B
782 815Right-handed alpha
Helix 57
AG3
B
817 843Right-handed alpha
Helix 58
AG4
B
864 871Right-handed alpha
Helix 59
AG5
B
901 918Right-handed alpha
Helix 60
AG6
B
951 964Right-handed alpha
Helix 61
AG7
B
982 1000Right-handed alpha
Helix 62
AG8
B
1011 1016Right-handed alpha
Helix 63
AG9
B
1016 1021Right-handed alpha
Helix 64
AH1
B
1067 1076Right-handed alpha
Helix 65
AH2
B
1079 1112Right-handed alpha
Helix 66
AH3
B
1115 1123Right-handed alpha
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There are 10 sheets in PDB entry 8OM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
198 201parallel
Strand 3
A
223 226parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
291 293parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 516first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
549 552anti-parallel
Strand 4
A
540 544anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
697 703parallel
Strand 3
A
633 637anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
744 747parallel
Strand 3
A
777 781parallel
Strand 4
A
664 667parallel
Strand 5
A
797 805parallel
Strand 6
A
812 819anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 250first strand
Strand 2
B
303 307parallel
Strand 3
B
330 334anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
281 286anti-parallel
Strand 3
B
275 276anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 458first strand
Strand 2
B
425 429parallel
Strand 3
B
368 372parallel
Strand 4
B
386 392anti-parallel
Strand 5
B
401 407anti-parallel
Strand 6
B
526 527parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 884first strand
Strand 2
B
857 862anti-parallel
Strand 3
B
926 928anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
934 937first strand
Strand 2
B
970 975parallel
Strand 3
B
1004 1008parallel
Strand 4
B
891 895parallel
Strand 5
B
1025 1030parallel
Strand 6
B
1059 1061anti-parallel
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