Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OMA entry

There are 4 chains in PDB entry 8OMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 1 G 17
D
 C 1 G 17
A
 SER 144THR 934
B
 MET 532GLU 1124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8OMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 193Right-handed alpha
Helix 2
AA2
A
207 220Right-handed alpha
Helix 3
AA3
A
228 232Right-handed 310
Helix 4
AA4
A
236 245Right-handed alpha
Helix 5
AA5
A
247 251Right-handed 310
Helix 6
AA6
A
254 262Right-handed 310
Helix 7
AA7
A
263 277Right-handed alpha
Helix 8
AA8
A
282 286Right-handed 310
Helix 9
AA9
A
303 310Right-handed alpha
Helix 10
AB1
A
325 331Right-handed alpha
Helix 11
AB2
A
335 348Right-handed alpha
Helix 12
AB3
A
352 369Right-handed alpha
Helix 13
AB4
A
369 379Right-handed alpha
Helix 14
AB5
A
386 396Right-handed alpha
Helix 15
AB6
A
400 423Right-handed alpha
Helix 16
AB7
A
429 457Right-handed alpha
Helix 17
AB8
A
459 465Right-handed alpha
Helix 18
AB9
A
475 504Right-handed alpha
Helix 19
AC1
A
554 587Right-handed alpha
Helix 20
AC2
A
588 615Right-handed alpha
Helix 21
AC3
A
674 692Right-handed alpha
Helix 22
AC4
A
723 739Right-handed alpha
Helix 23
AC5
A
756 773Right-handed alpha
Helix 24
AC6
A
786 793Right-handed 310
Helix 25
AC7
A
826 834Right-handed alpha
Helix 26
AC8
A
837 851Right-handed alpha
Helix 27
AC9
A
879 894Right-handed alpha
Helix 28
AD1
A
900 919Right-handed alpha
Helix 29
AD2
A
920 930Right-handed alpha
Helix 30
AD3
B
538 545Right-handed alpha
Helix 31
AD4
B
559 565Right-handed alpha
Helix 32
AD5
B
569 581Right-handed alpha
Helix 33
AD6
B
586 602Right-handed alpha
Helix 34
AD7
B
606 615Right-handed alpha
Helix 35
AD8
B
622 630Right-handed alpha
Helix 36
AD9
B
634 663Right-handed alpha
Helix 37
AE1
B
665 679Right-handed alpha
Helix 38
AE2
B
682 688Right-handed alpha
Helix 39
AE3
B
690 697Right-handed alpha
Helix 40
AE4
B
705 708Right-handed 310
Helix 41
AE5
B
709 738Right-handed alpha
Helix 42
AE6
B
758 762Right-handed 310
Helix 43
AE7
B
782 817Right-handed alpha
Helix 44
AE8
B
817 844Right-handed alpha
Helix 45
AE9
B
864 871Right-handed alpha
Helix 46
AF1
B
901 919Right-handed alpha
Helix 47
AF2
B
944 948Right-handed 310
Helix 48
AF3
B
950 966Right-handed alpha
Helix 49
AF4
B
982 1000Right-handed alpha
Helix 50
AF5
B
1016 1021Right-handed alpha
Helix 51
AF6
B
1068 1076Right-handed alpha
Helix 52
AF7
B
1079 1111Right-handed alpha
Helix 53
AF8
B
1115 1124Right-handed alpha
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There are 9 sheets in PDB entry 8OMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
198 202parallel
Strand 3
A
147 153parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
172 178anti-parallel
Strand 6
A
290 291parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 516first strand
Strand 2
A
520 523anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 541first strand
Strand 2
A
551 553anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 635first strand
Strand 2
A
699 702anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
744 747parallel
Strand 3
A
777 780parallel
Strand 4
A
664 667parallel
Strand 5
A
797 807parallel
Strand 6
A
810 818anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
754 756first strand
Strand 2
B
778 781anti-parallel
Strand 3
B
769 770anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 882first strand
Strand 2
B
857 862anti-parallel
Strand 3
B
926 929anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
892 895first strand
Strand 2
B
1026 1034parallel
Strand 3
B
1053 1061anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
935 937first strand
Strand 2
B
971 975parallel
Strand 3
B
1004 1008parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il