Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OMD entry

There are 4 chains in PDB entry 8OMD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	VAL 298
B	GLU 3	VAL 298
C	GLU 3	VAL 298
D	LYS 4	VAL 298

There are 60 helices in PDB entry 8OMD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	66	79	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	127	128	Right-handed 310
Helix 5	AA5	A	129	131	Right-handed 310
Helix 6	AA6	A	142	159	Right-handed alpha
Helix 7	AA7	A	160	165	Right-handed 310
Helix 8	AA8	A	176	185	Right-handed 310
Helix 9	AA9	A	192	199	Right-handed alpha
Helix 10	AB1	A	203	212	Right-handed alpha
Helix 11	AB2	A	213	215	Right-handed 310
Helix 12	AB3	A	226	228	Right-handed 310
Helix 13	AB4	A	255	270	Right-handed alpha
Helix 14	AB5	A	273	289	Right-handed alpha
Helix 15	AB6	A	294	298	Right-handed 310
Helix 16	AB7	B	41	54	Right-handed alpha
Helix 17	AB8	B	66	79	Right-handed alpha
Helix 18	AB9	B	121	126	Right-handed alpha
Helix 19	AC1	B	127	128	Right-handed 310
Helix 20	AC2	B	129	131	Right-handed 310
Helix 21	AC3	B	142	159	Right-handed alpha
Helix 22	AC4	B	160	165	Right-handed 310
Helix 23	AC5	B	176	185	Right-handed 310
Helix 24	AC6	B	192	199	Right-handed alpha
Helix 25	AC7	B	203	212	Right-handed alpha
Helix 26	AC8	B	213	215	Right-handed 310
Helix 27	AC9	B	226	228	Right-handed 310
Helix 28	AD1	B	255	270	Right-handed alpha
Helix 29	AD2	B	273	289	Right-handed alpha
Helix 30	AD3	B	294	298	Right-handed 310
Helix 31	AD4	C	41	54	Right-handed alpha
Helix 32	AD5	C	66	79	Right-handed alpha
Helix 33	AD6	C	121	126	Right-handed alpha
Helix 34	AD7	C	127	128	Right-handed 310
Helix 35	AD8	C	129	131	Right-handed 310
Helix 36	AD9	C	142	159	Right-handed alpha
Helix 37	AE1	C	160	165	Right-handed 310
Helix 38	AE2	C	176	185	Right-handed 310
Helix 39	AE3	C	192	199	Right-handed alpha
Helix 40	AE4	C	203	212	Right-handed alpha
Helix 41	AE5	C	213	215	Right-handed 310
Helix 42	AE6	C	226	228	Right-handed 310
Helix 43	AE7	C	255	270	Right-handed alpha
Helix 44	AE8	C	273	289	Right-handed alpha
Helix 45	AE9	C	294	298	Right-handed 310
Helix 46	AF1	D	41	53	Right-handed alpha
Helix 47	AF2	D	66	79	Right-handed alpha
Helix 48	AF3	D	121	126	Right-handed alpha
Helix 49	AF4	D	127	128	Right-handed 310
Helix 50	AF5	D	129	131	Right-handed 310
Helix 51	AF6	D	142	159	Right-handed alpha
Helix 52	AF7	D	160	165	Right-handed 310
Helix 53	AF8	D	176	185	Right-handed 310
Helix 54	AF9	D	192	199	Right-handed alpha
Helix 55	AG1	D	203	212	Right-handed alpha
Helix 56	AG2	D	213	215	Right-handed 310
Helix 57	AG3	D	226	228	Right-handed 310
Helix 58	AG4	D	255	270	Right-handed alpha
Helix 59	AG5	D	273	289	Right-handed alpha
Helix 60	AG6	D	294	298	Right-handed 310

There are 12 sheets in PDB entry 8OMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	5	9	parallel
Strand 3	A	133	139	parallel
Strand 4	A	167	172	parallel
Strand 5	A	188	191	parallel
Strand 6	A	220	224	parallel
Strand 7	A	230	233	anti-parallel
Strand 8	A	239	242	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	96	102	parallel
Strand 4	A	108	113	anti-parallel
Strand 5	C	29	31	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	C	108	113	parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	13	20	parallel
Strand 5	C	34	40	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	87	88	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	5	9	parallel
Strand 3	B	133	139	parallel
Strand 4	B	167	172	parallel
Strand 5	B	188	191	parallel
Strand 6	B	220	224	parallel
Strand 7	B	230	233	anti-parallel
Strand 8	B	239	242	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	96	102	parallel
Strand 4	B	108	113	anti-parallel
Strand 5	D	29	31	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	D	108	113	parallel
Strand 3	D	96	102	anti-parallel
Strand 4	D	13	20	parallel
Strand 5	D	34	40	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	87	88	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	5	9	parallel
Strand 3	C	133	139	parallel
Strand 4	C	167	172	parallel
Strand 5	C	188	191	parallel
Strand 6	C	220	224	parallel
Strand 7	C	230	233	anti-parallel
Strand 8	C	239	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	87	88	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	5	9	parallel
Strand 3	D	133	139	parallel
Strand 4	D	167	172	parallel
Strand 5	D	188	191	parallel
Strand 6	D	220	224	parallel
Strand 7	D	230	233	anti-parallel
Strand 8	D	239	242	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	87	88	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OMD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMD