Analysis of interatomic Contacts of Structural Units in PDB entry:
8OML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OML entry

There are 3 chains in PDB entry 8OML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 827	TRP 1151
B	ASN 831	TRP 1151
C	ASP 823	TRP 1151

There are 6 helices in PDB entry 8OML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1033	1039	Right-handed alpha
Helix 2	AA2	A	1129	1132	Right-handed 310
Helix 3	AA3	B	1033	1039	Right-handed alpha
Helix 4	AA4	B	1129	1132	Right-handed 310
Helix 5	AA5	C	1033	1039	Right-handed alpha
Helix 6	AA6	C	1129	1132	Right-handed 310

There are 7 sheets in PDB entry 8OML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	922	first strand
Strand 2	A	907	916	anti-parallel
Strand 3	B	929	937	parallel
Strand 4	B	949	955	anti-parallel
Strand 5	B	966	972	anti-parallel
Strand 6	B	981	986	anti-parallel
Strand 7	B	992	994	anti-parallel
Strand 8	B	1003	1005	parallel
Strand 9	C	1009	1010	parallel
Strand 10	A	1043	1049	anti-parallel
Strand 11	A	1080	1088	anti-parallel
Strand 12	A	1093	1107	anti-parallel
Strand 13	A	1113	1128	anti-parallel
Strand 14	A	1133	1143	anti-parallel
Strand 15	A	1146	1150	anti-parallel

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There are 22 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1025	1029	first strand
Strand 2	A	1018	1022	anti-parallel
Strand 3	A	1053	1056	parallel
Strand 4	A	1070	1073	anti-parallel
Strand 5	A	1093	1107	anti-parallel
Strand 6	A	1080	1088	anti-parallel
Strand 7	A	1043	1049	anti-parallel
Strand 8	C	1009	1010	anti-parallel
Strand 9	B	1003	1005	parallel
Strand 10	B	992	994	parallel
Strand 11	B	981	986	anti-parallel
Strand 12	B	966	972	anti-parallel
Strand 13	B	949	955	anti-parallel
Strand 14	B	929	937	anti-parallel
Strand 15	A	907	916	parallel
Strand 16	C	895	901	parallel
Strand 17	B	883	888	parallel
Strand 18	A	865	867	parallel
Strand 19	A	854	856	parallel
Strand 20	A	844	848	anti-parallel
Strand 21	A	832	836	anti-parallel
Strand 22	C	825	828	parallel

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There are 21 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	832	835	first strand
Strand 2	C	844	848	anti-parallel
Strand 3	C	854	856	anti-parallel
Strand 4	C	865	867	parallel
Strand 5	A	883	888	parallel
Strand 6	B	895	901	parallel
Strand 7	C	907	916	parallel
Strand 8	A	929	937	parallel
Strand 9	A	949	955	anti-parallel
Strand 10	A	966	972	anti-parallel
Strand 11	A	981	986	anti-parallel
Strand 12	A	992	994	anti-parallel
Strand 13	A	1003	1005	parallel
Strand 14	B	1009	1010	parallel
Strand 15	C	1043	1049	anti-parallel
Strand 16	C	1080	1088	anti-parallel
Strand 17	C	1093	1107	anti-parallel
Strand 18	C	1070	1073	anti-parallel
Strand 19	C	1053	1056	anti-parallel
Strand 20	C	1018	1022	parallel
Strand 21	C	1025	1029	anti-parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	921	922	first strand
Strand 2	C	907	916	anti-parallel
Strand 3	A	929	937	parallel
Strand 4	A	949	955	anti-parallel
Strand 5	A	966	972	anti-parallel
Strand 6	A	981	986	anti-parallel
Strand 7	A	992	994	anti-parallel
Strand 8	A	1003	1005	parallel
Strand 9	B	1009	1010	parallel
Strand 10	C	1043	1049	anti-parallel
Strand 11	C	1080	1088	anti-parallel
Strand 12	C	1093	1107	anti-parallel
Strand 13	C	1113	1128	anti-parallel
Strand 14	C	1133	1143	anti-parallel
Strand 15	C	1146	1150	anti-parallel

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There are 18 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	836	first strand
Strand 2	B	843	848	anti-parallel
Strand 3	B	854	856	anti-parallel
Strand 4	B	865	867	parallel
Strand 5	C	883	888	parallel
Strand 6	A	895	901	parallel
Strand 7	B	907	916	parallel
Strand 8	C	929	937	parallel
Strand 9	C	949	955	anti-parallel
Strand 10	C	966	972	anti-parallel
Strand 11	C	981	986	anti-parallel
Strand 12	C	992	994	anti-parallel
Strand 13	C	1003	1005	parallel
Strand 14	A	1009	1010	parallel
Strand 15	B	1043	1049	anti-parallel
Strand 16	B	1080	1088	anti-parallel
Strand 17	B	1093	1108	anti-parallel
Strand 18	B	1069	1073	anti-parallel

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There are 15 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	922	first strand
Strand 2	B	907	916	anti-parallel
Strand 3	C	929	937	parallel
Strand 4	C	949	955	anti-parallel
Strand 5	C	966	972	anti-parallel
Strand 6	C	981	986	anti-parallel
Strand 7	C	992	994	anti-parallel
Strand 8	C	1003	1005	parallel
Strand 9	A	1009	1010	parallel
Strand 10	B	1043	1049	anti-parallel
Strand 11	B	1080	1088	anti-parallel
Strand 12	B	1093	1108	anti-parallel
Strand 13	B	1113	1128	anti-parallel
Strand 14	B	1133	1143	anti-parallel
Strand 15	B	1146	1150	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1029	first strand
Strand 2	B	1018	1022	anti-parallel
Strand 3	B	1053	1056	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OML