Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OMO entry

There are 2 chains in PDB entry 8OMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 144ILE 930
B
 MET 532GLU 1124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8OMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 195Right-handed alpha
Helix 2
AA2
A
207 220Right-handed alpha
Helix 3
AA3
A
236 245Right-handed alpha
Helix 4
AA4
A
265 277Right-handed alpha
Helix 5
AA5
A
303 310Right-handed alpha
Helix 6
AA6
A
325 331Right-handed alpha
Helix 7
AA7
A
335 348Right-handed alpha
Helix 8
AA8
A
352 369Right-handed alpha
Helix 9
AA9
A
369 379Right-handed alpha
Helix 10
AB1
A
386 396Right-handed alpha
Helix 11
AB2
A
400 423Right-handed alpha
Helix 12
AB3
A
429 457Right-handed alpha
Helix 13
AB4
A
459 466Right-handed alpha
Helix 14
AB5
A
475 503Right-handed alpha
Helix 15
AB6
A
553 587Right-handed alpha
Helix 16
AB7
A
588 615Right-handed alpha
Helix 17
AB8
A
674 692Right-handed alpha
Helix 18
AB9
A
723 739Right-handed alpha
Helix 19
AC1
A
756 772Right-handed alpha
Helix 20
AC2
A
786 788Right-handed 310
Helix 21
AC3
A
789 794Right-handed alpha
Helix 22
AC4
A
826 834Right-handed alpha
Helix 23
AC5
A
837 851Right-handed alpha
Helix 24
AC6
A
874 890Right-handed alpha
Helix 25
AC7
A
921 930Right-handed alpha
Helix 26
AC8
B
538 545Right-handed alpha
Helix 27
AC9
B
560 565Right-handed alpha
Helix 28
AD1
B
569 582Right-handed alpha
Helix 29
AD2
B
586 602Right-handed alpha
Helix 30
AD3
B
606 616Right-handed alpha
Helix 31
AD4
B
620 630Right-handed alpha
Helix 32
AD5
B
635 663Right-handed alpha
Helix 33
AD6
B
666 679Right-handed alpha
Helix 34
AD7
B
683 688Right-handed alpha
Helix 35
AD8
B
690 697Right-handed alpha
Helix 36
AD9
B
705 708Right-handed 310
Helix 37
AE1
B
709 737Right-handed alpha
Helix 38
AE2
B
759 764Right-handed alpha
Helix 39
AE3
B
772 775Right-handed 310
Helix 40
AE4
B
782 817Right-handed alpha
Helix 41
AE5
B
817 844Right-handed alpha
Helix 42
AE6
B
864 871Right-handed alpha
Helix 43
AE7
B
901 919Right-handed alpha
Helix 44
AE8
B
944 948Right-handed 310
Helix 45
AE9
B
950 966Right-handed alpha
Helix 46
AF1
B
982 1000Right-handed alpha
Helix 47
AF2
B
1011 1016Right-handed alpha
Helix 48
AF3
B
1017 1021Right-handed 310
Helix 49
AF4
B
1068 1076Right-handed alpha
Helix 50
AF5
B
1079 1111Right-handed alpha
Helix 51
AF6
B
1118 1123Right-handed alpha
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There are 7 sheets in PDB entry 8OMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
198 202parallel
Strand 5
A
223 227parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 516first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
549 552anti-parallel
Strand 4
A
540 544anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 655first strand
Strand 2
A
632 637anti-parallel
Strand 3
A
699 702anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 711first strand
Strand 2
A
744 747parallel
Strand 3
A
777 780parallel
Strand 4
A
664 668parallel
Strand 5
A
797 807parallel
Strand 6
A
810 818anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
754 756first strand
Strand 2
B
778 781anti-parallel
Strand 3
B
769 770anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 882first strand
Strand 2
B
857 862anti-parallel
Strand 3
B
926 929anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
935 937first strand
Strand 2
B
971 975parallel
Strand 3
B
1005 1008parallel
Strand 4
B
891 895parallel
Strand 5
B
1026 1033parallel
Strand 6
B
1054 1061anti-parallel
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