Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OMQ entry

There are 2 chains in PDB entry 8OMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 530TRP 1122
A
 GLY 146ILE 930
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8OMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
538 545Right-handed alpha
Helix 2
AA2
B
559 565Right-handed alpha
Helix 3
AA3
B
569 582Right-handed alpha
Helix 4
AA4
B
586 603Right-handed alpha
Helix 5
AA5
B
606 617Right-handed alpha
Helix 6
AA6
B
620 630Right-handed alpha
Helix 7
AA7
B
634 654Right-handed alpha
Helix 8
AA8
B
655 663Right-handed alpha
Helix 9
AA9
B
665 673Right-handed alpha
Helix 10
AB1
B
674 679Right-handed alpha
Helix 11
AB2
B
680 682Right-handed 310
Helix 12
AB3
B
683 688Right-handed alpha
Helix 13
AB4
B
690 697Right-handed alpha
Helix 14
AB5
B
705 708Right-handed 310
Helix 15
AB6
B
709 729Right-handed alpha
Helix 16
AB7
B
729 738Right-handed alpha
Helix 17
AB8
B
782 815Right-handed alpha
Helix 18
AB9
B
817 843Right-handed alpha
Helix 19
AC1
B
864 871Right-handed alpha
Helix 20
AC2
B
901 919Right-handed alpha
Helix 21
AC3
B
944 948Right-handed 310
Helix 22
AC4
B
950 965Right-handed alpha
Helix 23
AC5
B
982 1000Right-handed alpha
Helix 24
AC6
B
1011 1016Right-handed alpha
Helix 25
AC7
B
1017 1021Right-handed 310
Helix 26
AC8
B
1068 1076Right-handed alpha
Helix 27
AC9
B
1079 1111Right-handed alpha
Helix 28
AD1
B
1115 1121Right-handed alpha
Helix 29
AD2
A
185 195Right-handed alpha
Helix 30
AD3
A
210 219Right-handed alpha
Helix 31
AD4
A
228 232Right-handed 310
Helix 32
AD5
A
236 244Right-handed alpha
Helix 33
AD6
A
258 262Right-handed 310
Helix 34
AD7
A
263 275Right-handed alpha
Helix 35
AD8
A
282 286Right-handed 310
Helix 36
AD9
A
303 311Right-handed alpha
Helix 37
AE1
A
326 331Right-handed alpha
Helix 38
AE2
A
335 348Right-handed alpha
Helix 39
AE3
A
352 369Right-handed alpha
Helix 40
AE4
A
369 378Right-handed alpha
Helix 41
AE5
A
380 384Right-handed 310
Helix 42
AE6
A
388 396Right-handed alpha
Helix 43
AE7
A
400 413Right-handed alpha
Helix 44
AE8
A
413 424Right-handed alpha
Helix 45
AE9
A
429 456Right-handed alpha
Helix 46
AF1
A
475 504Right-handed alpha
Helix 47
AF2
A
526 532Right-handed 310
Helix 48
AF3
A
553 586Right-handed alpha
Helix 49
AF4
A
588 613Right-handed alpha
Helix 50
AF5
A
641 645Right-handed 310
Helix 51
AF6
A
674 692Right-handed alpha
Helix 52
AF7
A
725 736Right-handed alpha
Helix 53
AF8
A
755 774Right-handed alpha
Helix 54
AF9
A
784 788Right-handed 310
Helix 55
AG1
A
789 794Right-handed alpha
Helix 56
AG2
A
826 834Right-handed alpha
Helix 57
AG3
A
837 850Right-handed alpha
Helix 58
AG4
A
871 893Right-handed alpha
Helix 59
AG5
A
900 919Right-handed alpha
Helix 60
AG6
A
920 930Right-handed alpha
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There are 7 sheets in PDB entry 8OMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
754 757first strand
Strand 2
B
777 780anti-parallel
Strand 3
B
770 773anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 884first strand
Strand 2
B
857 862anti-parallel
Strand 3
B
926 927anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
935 938first strand
Strand 2
B
971 975parallel
Strand 3
B
1004 1008parallel
Strand 4
B
891 895parallel
Strand 5
B
1027 1033parallel
Strand 6
B
1054 1061anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 153first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
172 175anti-parallel
Strand 4
A
290 293parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 711parallel
Strand 3
A
743 747parallel
Strand 4
A
777 781parallel
Strand 5
A
664 668parallel
Strand 6
A
797 806parallel
Strand 7
A
811 819anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 543first strand
Strand 2
A
550 552anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 657first strand
Strand 2
A
632 637anti-parallel
Strand 3
A
699 700anti-parallel
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