Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OMV entry

There are 2 chains in PDB entry 8OMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	ARG 666
B	THR 8	PRO 627

There are 87 helices in PDB entry 8OMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	68	Right-handed alpha
Helix 2	AA2	A	103	109	Right-handed alpha
Helix 3	AA3	A	118	139	Right-handed alpha
Helix 4	AA4	A	190	195	Right-handed alpha
Helix 5	AA5	A	201	217	Right-handed alpha
Helix 6	AA6	A	227	238	Right-handed alpha
Helix 7	AA7	A	266	281	Right-handed alpha
Helix 8	AA8	A	298	309	Right-handed alpha
Helix 9	AA9	A	332	344	Right-handed alpha
Helix 10	AB1	A	407	416	Right-handed alpha
Helix 11	AB2	A	422	501	Right-handed alpha
Helix 12	AB3	A	510	522	Right-handed alpha
Helix 13	AB4	A	526	547	Right-handed alpha
Helix 14	AB5	A	556	575	Right-handed alpha
Helix 15	AB6	A	587	666	Right-handed alpha
Helix 16	AB7	B	51	68	Right-handed alpha
Helix 17	AB8	B	103	109	Right-handed alpha
Helix 18	AB9	B	118	139	Right-handed alpha
Helix 19	AC1	B	190	196	Right-handed alpha
Helix 20	AC2	B	201	217	Right-handed alpha
Helix 21	AC3	B	227	238	Right-handed alpha
Helix 22	AC4	B	266	281	Right-handed alpha
Helix 23	AC5	B	298	309	Right-handed alpha
Helix 24	AC6	B	332	344	Right-handed alpha
Helix 25	AC7	B	366	372	Right-handed 310
Helix 26	AC8	B	407	416	Right-handed alpha
Helix 27	AC9	B	422	498	Right-handed alpha
Helix 28	AD1	B	510	524	Right-handed alpha
Helix 29	AD2	B	526	550	Right-handed alpha
Helix 30	AD3	B	558	575	Right-handed alpha
Helix 31	AD4	B	578	582	Right-handed 310
Helix 32	AD5	B	587	662	Right-handed alpha
Helix 33	AD6	C	51	68	Right-handed alpha
Helix 34	AD7	C	103	109	Right-handed alpha
Helix 35	AD8	C	118	139	Right-handed alpha
Helix 36	AD9	C	190	194	Right-handed 310
Helix 37	AE1	C	201	217	Right-handed alpha
Helix 38	AE2	C	227	238	Right-handed alpha
Helix 39	AE3	C	266	281	Right-handed alpha
Helix 40	AE4	C	298	309	Right-handed alpha
Helix 41	AE5	C	332	344	Right-handed alpha
Helix 42	AE6	C	366	370	Right-handed 310
Helix 43	AE7	C	407	416	Right-handed alpha
Helix 44	AE8	C	422	498	Right-handed alpha
Helix 45	AE9	C	499	501	Right-handed 310
Helix 46	AF1	C	507	512	Right-handed alpha
Helix 47	AF2	C	512	517	Right-handed alpha
Helix 48	AF3	C	519	524	Right-handed alpha
Helix 49	AF4	C	526	549	Right-handed alpha
Helix 50	AF5	C	558	575	Right-handed alpha
Helix 51	AF6	C	578	582	Right-handed 310
Helix 52	AF7	C	587	664	Right-handed alpha
Helix 53	AF8	D	51	68	Right-handed alpha
Helix 54	AF9	D	103	109	Right-handed alpha
Helix 55	AG1	D	118	139	Right-handed alpha
Helix 56	AG2	D	190	195	Right-handed alpha
Helix 57	AG3	D	201	217	Right-handed alpha
Helix 58	AG4	D	227	236	Right-handed alpha
Helix 59	AG5	D	266	281	Right-handed alpha
Helix 60	AG6	D	298	309	Right-handed alpha
Helix 61	AG7	D	332	344	Right-handed alpha
Helix 62	AG8	D	366	370	Right-handed 310
Helix 63	AG9	D	407	416	Right-handed alpha
Helix 64	AH1	D	422	498	Right-handed alpha
Helix 65	AH2	D	509	520	Right-handed alpha
Helix 66	AH3	D	521	523	Right-handed 310
Helix 67	AH4	D	526	549	Right-handed alpha
Helix 68	AH5	D	558	575	Right-handed alpha
Helix 69	AH6	D	578	582	Right-handed 310
Helix 70	AH7	D	587	662	Right-handed alpha
Helix 71	AH8	D	663	665	Right-handed 310
Helix 72	AH9	E	51	66	Right-handed alpha
Helix 73	AI1	E	103	109	Right-handed alpha
Helix 74	AI2	E	118	139	Right-handed alpha
Helix 75	AI3	E	190	195	Right-handed alpha
Helix 76	AI4	E	201	217	Right-handed alpha
Helix 77	AI5	E	227	238	Right-handed alpha
Helix 78	AI6	E	266	281	Right-handed alpha
Helix 79	AI7	E	298	309	Right-handed alpha
Helix 80	AI8	E	332	344	Right-handed alpha
Helix 81	AI9	E	366	371	Right-handed 310
Helix 82	AJ1	E	407	416	Right-handed alpha
Helix 83	AJ2	E	422	479	Right-handed alpha
Helix 84	AJ3	E	526	547	Right-handed alpha
Helix 85	AJ4	E	559	575	Right-handed alpha
Helix 86	AJ5	E	578	582	Right-handed 310
Helix 87	AJ6	E	587	643	Right-handed alpha

There are 21 sheets in PDB entry 8OMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	40	44	anti-parallel
Strand 4	A	94	97	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	161	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	253	256	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	327	first strand
Strand 2	A	310	316	anti-parallel
Strand 3	A	387	391	parallel
Strand 4	A	351	354	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	29	34	anti-parallel
Strand 3	B	40	44	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	155	first strand
Strand 2	B	160	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	253	256	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	327	first strand
Strand 2	B	310	316	anti-parallel
Strand 3	B	386	391	parallel
Strand 4	B	351	354	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	29	34	anti-parallel
Strand 3	C	40	44	anti-parallel
Strand 4	C	95	97	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	155	first strand
Strand 2	C	160	164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	253	256	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	327	first strand
Strand 2	C	310	316	anti-parallel
Strand 3	C	386	391	parallel
Strand 4	C	351	354	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	29	34	anti-parallel
Strand 3	D	40	44	anti-parallel
Strand 4	D	94	97	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	160	164	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	253	256	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	327	first strand
Strand 2	D	310	316	anti-parallel
Strand 3	D	386	391	parallel
Strand 4	D	351	354	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	29	34	anti-parallel
Strand 3	E	40	44	anti-parallel
Strand 4	E	94	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	155	first strand
Strand 2	E	160	164	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	247	first strand
Strand 2	E	253	256	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	327	first strand
Strand 2	E	310	316	anti-parallel
Strand 3	E	386	391	parallel
Strand 4	E	351	354	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMV