Analysis of interatomic Contacts of Structural Units in PDB entry:
8OMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OMZ entry

There are 4 chains in PDB entry 8OMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 412
B
 SER -1ALA 125
C
 ARG 4LEU 412
D
 SER 0ALA 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8OMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
42 61Right-handed alpha
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
87 112Right-handed alpha
Helix 7
AA7
A
114 120Right-handed alpha
Helix 8
AA8
A
121 144Right-handed alpha
Helix 9
AA9
A
155 176Right-handed alpha
Helix 10
AB1
A
183 198Right-handed alpha
Helix 11
AB2
A
204 209Right-handed alpha
Helix 12
AB3
A
224 253Right-handed alpha
Helix 13
AB4
A
262 279Right-handed alpha
Helix 14
AB5
A
288 299Right-handed alpha
Helix 15
AB6
A
302 318Right-handed alpha
Helix 16
AB7
A
319 328Right-handed alpha
Helix 17
AB8
A
330 356Right-handed alpha
Helix 18
AB9
A
362 378Right-handed alpha
Helix 19
AC1
A
391 412Right-handed alpha
Helix 20
AC2
B
87 91Right-handed 310
Helix 21
AC3
C
13 33Right-handed alpha
Helix 22
AC4
C
36 40Right-handed 310
Helix 23
AC5
C
42 61Right-handed alpha
Helix 24
AC6
C
75 81Right-handed alpha
Helix 25
AC7
C
82 85Right-handed 310
Helix 26
AC8
C
86 104Right-handed alpha
Helix 27
AC9
C
115 120Right-handed alpha
Helix 28
AD1
C
121 144Right-handed alpha
Helix 29
AD2
C
155 176Right-handed alpha
Helix 30
AD3
C
183 199Right-handed alpha
Helix 31
AD4
C
204 209Right-handed alpha
Helix 32
AD5
C
224 226Right-handed 310
Helix 33
AD6
C
227 253Right-handed alpha
Helix 34
AD7
C
263 279Right-handed alpha
Helix 35
AD8
C
288 299Right-handed alpha
Helix 36
AD9
C
302 318Right-handed alpha
Helix 37
AE1
C
319 328Right-handed alpha
Helix 38
AE2
C
330 356Right-handed alpha
Helix 39
AE3
C
362 378Right-handed alpha
Helix 40
AE4
C
391 412Right-handed alpha
Helix 41
AE5
D
87 91Right-handed 310
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There are 10 sheets in PDB entry 8OMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
285 287anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
387 390anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 73anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
123 124parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
114 115anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
119 121anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
285 287anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 72anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
92 99anti-parallel
Strand 5
D
112 115anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
92 99anti-parallel
Strand 5
D
119 121anti-parallel
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