Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ONA entry

There are 6 chains in PDB entry 8ONA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 529
D
 PHE 609PHE 612
B
 ALA 2LEU 529
C
 ALA 2LEU 529
E
 PHE 609PHE 612
F
 PHE 609PHE 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8ONA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
17 24Right-handed alpha
Helix 3
AA3
A
27 58Right-handed alpha
Helix 4
AA4
A
86 100Right-handed alpha
Helix 5
AA5
A
102 107Right-handed 310
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
125 133Right-handed alpha
Helix 8
AA8
A
136 144Right-handed alpha
Helix 9
AA9
A
145 153Right-handed alpha
Helix 10
AB1
A
154 159Right-handed alpha
Helix 11
AB2
A
180 184Right-handed alpha
Helix 12
AB3
A
314 332Right-handed alpha
Helix 13
AB4
A
357 362Right-handed 310
Helix 14
AB5
A
365 390Right-handed alpha
Helix 15
AB6
A
392 398Right-handed alpha
Helix 16
AB7
A
423 435Right-handed alpha
Helix 17
AB8
A
438 444Right-handed 310
Helix 18
AB9
A
445 447Right-handed 310
Helix 19
AC1
A
448 459Right-handed alpha
Helix 20
AC2
A
460 462Right-handed 310
Helix 21
AC3
A
463 468Right-handed alpha
Helix 22
AC4
A
493 509Right-handed alpha
Helix 23
AC5
A
512 529Right-handed alpha
Helix 24
AC6
B
3 14Right-handed alpha
Helix 25
AC7
B
17 24Right-handed alpha
Helix 26
AC8
B
27 58Right-handed alpha
Helix 27
AC9
B
86 100Right-handed alpha
Helix 28
AD1
B
102 107Right-handed 310
Helix 29
AD2
B
112 124Right-handed alpha
Helix 30
AD3
B
125 133Right-handed alpha
Helix 31
AD4
B
136 144Right-handed alpha
Helix 32
AD5
B
145 153Right-handed alpha
Helix 33
AD6
B
154 159Right-handed alpha
Helix 34
AD7
B
180 184Right-handed alpha
Helix 35
AD8
B
314 332Right-handed alpha
Helix 36
AD9
B
357 362Right-handed 310
Helix 37
AE1
B
365 390Right-handed alpha
Helix 38
AE2
B
392 398Right-handed alpha
Helix 39
AE3
B
423 435Right-handed alpha
Helix 40
AE4
B
438 444Right-handed 310
Helix 41
AE5
B
445 447Right-handed 310
Helix 42
AE6
B
448 459Right-handed alpha
Helix 43
AE7
B
460 462Right-handed 310
Helix 44
AE8
B
463 468Right-handed alpha
Helix 45
AE9
B
493 509Right-handed alpha
Helix 46
AF1
B
512 529Right-handed alpha
Helix 47
AF2
C
3 14Right-handed alpha
Helix 48
AF3
C
17 24Right-handed alpha
Helix 49
AF4
C
27 58Right-handed alpha
Helix 50
AF5
C
86 100Right-handed alpha
Helix 51
AF6
C
102 107Right-handed 310
Helix 52
AF7
C
112 124Right-handed alpha
Helix 53
AF8
C
125 133Right-handed alpha
Helix 54
AF9
C
136 144Right-handed alpha
Helix 55
AG1
C
145 153Right-handed alpha
Helix 56
AG2
C
154 159Right-handed alpha
Helix 57
AG3
C
180 184Right-handed alpha
Helix 58
AG4
C
314 332Right-handed alpha
Helix 59
AG5
C
357 362Right-handed 310
Helix 60
AG6
C
365 390Right-handed alpha
Helix 61
AG7
C
392 398Right-handed alpha
Helix 62
AG8
C
423 435Right-handed alpha
Helix 63
AG9
C
438 444Right-handed 310
Helix 64
AH1
C
445 447Right-handed 310
Helix 65
AH2
C
448 459Right-handed alpha
Helix 66
AH3
C
460 462Right-handed 310
Helix 67
AH4
C
463 468Right-handed alpha
Helix 68
AH5
C
493 509Right-handed alpha
Helix 69
AH6
C
512 529Right-handed alpha
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There are 9 sheets in PDB entry 8ONA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 68first strand
Strand 2
A
483 490anti-parallel
Strand 3
A
279 291parallel
Strand 4
A
406 413anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
169 174anti-parallel
Strand 3
A
218 224anti-parallel
Strand 4
A
471 478anti-parallel
Strand 5
A
279 291parallel
Strand 6
A
416 418anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
255 260anti-parallel
Strand 5
A
273 275anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 68first strand
Strand 2
B
483 490anti-parallel
Strand 3
B
279 291parallel
Strand 4
B
406 413anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
169 174anti-parallel
Strand 3
B
218 224anti-parallel
Strand 4
B
471 478anti-parallel
Strand 5
B
279 291parallel
Strand 6
B
416 418anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 189first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
255 260anti-parallel
Strand 5
B
273 275anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 68first strand
Strand 2
C
483 490anti-parallel
Strand 3
C
279 291parallel
Strand 4
C
406 413anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
169 174anti-parallel
Strand 3
C
218 224anti-parallel
Strand 4
C
471 478anti-parallel
Strand 5
C
279 291parallel
Strand 6
C
416 418anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 189first strand
Strand 2
C
195 199anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
255 260anti-parallel
Strand 5
C
273 275anti-parallel
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